Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0870 ATGAGAAGAAATATCAATAATTCTGCTCTCTCATCTGAGTCTCGCAGAACTGGTGTTAGAGCCTCTGGTTACCATATTCCCATCGATAGCGACTCTTTCGAGGCGCCTGCGTTCTCCCGGTCTCCTTCTACACGTACTGCTCCTCCTCAGATGACACCCAGTCCACTGAATCCTCTGTGGTATATGGAAGATAGAAGGCAAGCAGGGCTCTACAGCATACCTGAAAGTGACTCTTACGAGGTGCCTGTGTTCTACCAAGCTTCTTCGAGACATGCCACTCCCGTACAGACGACACCAAGTCCACAGAATCCTCCGAGGTATCAGGCAGATAGAAGGCATGCAGGACTCTACAGCATACCTAATGACTCTTATGAGGTGCCAGTGTTCTACCGAAATTCTTCTAGACAAGCCACTCCTTATTTGCAGGATGAGAGAACGTCAAATGTAGTGAACCATCCTCGATTTCTGGAAGACAGTTTTCCAGCACAGCCGCATATTCTCAATAGAGATACAGGAATGGGATTCAACCCCAGGCTCAGAGAAACTCACCAGCCATCAGTTCCGCCTCGAAGATTGGCACGCCAATCAGATACGCAAGCTCCAACGGCGCTGGAAAATCCCAGATCTAGAGCATTGAGCAAGCTGAAGAAAGAAATCTACGAACCGAACATTCCAACTTCAAAGATGCTAGCGAAGAAATTGAGCTTCTATTACAGAGACTCAAAAAGTGTGAAGGCCTTGAAGGATATGGAGAACAAGGAAAAGAACGAAGACGGAAAGAGTTGTGCGGTGTGCTTAGAGGATTTCGTGCCGAAACAGGAGGTAATGGTGACGCCTTGCAAGCACATGTTTCATGAGGATTGTATAATGCCATGGCTGAGAAGCCAAGGTCAGTGTCCGATCTGTAGATTCGTGATCTGCGAGAAAGAGAGGGAGAATCCAATGCCGTTGAACGACGATGATGTTGGCACCAGTTACCTAATACCAGGGGAGCTTCTGTCAATTGTGAGGGCCATGGAAGAAGCCTTCCGATTGGATCCCGAAACTCATTGA 1053 0.4777 MRRNINNSALSSESRRTGVRASGYHIPIDSDSFEAPAFSRSPSTRTAPPQMTPSPLNPLWYMEDRRQAGLYSIPESDSYEVPVFYQASSRHATPVQTTPSPQNPPRYQADRRHAGLYSIPNDSYEVPVFYRNSSRQATPYLQDERTSNVVNHPRFLEDSFPAQPHILNRDTGMGFNPRLRETHQPSVPPRRLARQSDTQAPTALENPRSRALSKLKKEIYEPNIPTSKMLAKKLSFYYRDSKSVKALKDMENKEKNEDGKSCAVCLEDFVPKQEVMVTPCKHMFHEDCIMPWLRSQGQCPICRFVICEKERENPMPLNDDDVGTSYLIPGELLSIVRAMEEAFRLDPETH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0870 350 SUPERFAMILY RING/U-box 252 310 - -
Lele31g0870 350 FunFam RING/U-box superfamily protein 246 320 - -
Lele31g0870 350 MobiDBLite consensus disorder prediction 25 58 - -
Lele31g0870 350 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 110 304 - -
Lele31g0870 350 Pfam Ring finger domain 261 303 IPR001841 -
Lele31g0870 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 319 IPR013083 -
Lele31g0870 350 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Lele31g0870 350 SMART ring_2 262 302 IPR001841 -
Lele31g0870 350 CDD RING-H2_PA-TM-RING 262 303 - -
Lele31g0870 350 MobiDBLite consensus disorder prediction 173 207 - -
Lele31g0870 350 MobiDBLite consensus disorder prediction 189 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0870 Lele-ChrLele31 16218420 16221194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0870 206 343 C3H Transcription Factor Family AT3G58720 47.222 3.67e-38 135