Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0777 ATGGAACCGGCGTGCTTTGACTGTAATGAGGGTGTCTCGAGTAAGAAAAATTTGAAATCAATTTCTTTGCAGACGGGCATAGTTGATAGTGATAATGGTTGCTTCGAGTGCAATATATGCTTGGAGTCAGCTCATGATCCTGTGGTCACTTTGTGTGGTCACCTGTACTGCTGGCCTTGCATATTCAAGTGGCTTCAAGTTCAGAACTCTTCCGATGAATCAGACCAACCGCAACCTACATGCCCGGTTTGTAAAGCCGATCTTTCTCATACTTCATTAGTCCCTCTTTATGGCCGAGGTGCACATAGTTCGGATTCTGAACTCAAGAAGAAAACCCAGATGGATAAAGGAATACCTCGTAGACCGCCTCCTCACAGCTCGAATGCTATGTTAAATTCTTCAAGTGCATCTACTTCTCAACTGGGTCAACTCCACCCGAGTTACTTCCAATCACAAACACAACAATATTTGCCCCAACTTTATGGAGGATATGCTGTTAATAGATCACCATATCTTGGAGTTGCAGCCCTGATTAGTTTCTCATATCCCATTATTGATATGTTCAGTGAAACGTTCTTTGCAAGGAACTTTGGGAGTTCTGATTCTAATTCGTTGGCGTATCGTTATGTCGGCTACTACCCTCATATTGGGAGTGACAGTCATAGAATGAGAAGGCAGGAAATGCTCATTGACAAGTCTCTAAGCAGAGTATCTTTCTTTCTCCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTCTGA 759 0.4295 MEPACFDCNEGVSSKKNLKSISLQTGIVDSDNGCFECNICLESAHDPVVTLCGHLYCWPCIFKWLQVQNSSDESDQPQPTCPVCKADLSHTSLVPLYGRGAHSSDSELKKKTQMDKGIPRRPPPHSSNAMLNSSSASTSQLGQLHPSYFQSQTQQYLPQLYGGYAVNRSPYLGVAALISFSYPIIDMFSETFFARNFGSSDSNSLAYRYVGYYPHIGSDSHRMRRQEMLIDKSLSRVSFFLLCCVILCLLLF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0777 252 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
Lele31g0777 252 Pfam RING-type zinc-finger 37 82 IPR027370 -
Lele31g0777 252 MobiDBLite consensus disorder prediction 97 133 - -
Lele31g0777 252 CDD RING-HC_AtRMA_like 35 86 - -
Lele31g0777 252 MobiDBLite consensus disorder prediction 103 118 - -
Lele31g0777 252 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lele31g0777 252 SMART ring_2 37 84 IPR001841 -
Lele31g0777 252 SUPERFAMILY RING/U-box 32 97 - -
Lele31g0777 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 137 IPR013083 -
Lele31g0777 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 28 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0777 Lele-ChrLele31 15465510 15466268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0777 9 238 C3H Transcription Factor Family AT4G27470 43.162 3.59e-52 168