Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0698 ATGTTTCTGAGAAGCATTTTTCGCTCTCGGAAATTCTATAGATCCTTCAAGGAGGTTAGGGCCATCGAGGAAGATGAGGGGAAGGGGCGGCTTTGCGGTGATTCCGACGACGTTAGGGACTCCATGGAGTCCCCGCCTTACGGATGTTCATGGGCCACTATGCTGCCGGAGCTTCTTGAGGAGATCATTCGCCGTGTTGACGCCACCGAGGACCAGTGGCCCAACCGCCAAAACGTCGTTGCTTGCGCTGGCGTGTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTGCGGTTCCCTTCCCGCGACAGCGGCAGAATTACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCACGTGATCCACCCCACCAATGTATTATAAAGAGGAATAAAAAGACTTCGACATTTCACCTATATCTTGCCCTTACTCCACCATCATTCACAGATAAAGGTAAGTTTCTCTTGGCGGCTAAGAGATATAGGCGTGGTTCTGGGATTGAATATGCACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGCTCAGACTTTCTTGGCACCAACTTCACAATCTATGATAGTCAGCCACCCCATTGTGGTGCAAGGCCATCAAATGGCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTAATGAAGTTCCCAAACCAATCATCAGGAGAAAGTTCAGATAGCAGATCTCTGGAGGTTCACAAGACAAACAATGCAGGACAAGCTGCCTCGGAATACTCAATCTTGAAAAACAAATCTCCAAGGTGGCACGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTGACGGTAGCATCGGTGAAGAACTTTCAGCTGGTTGCTACGGTGGATCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACGGTTCTTCTTCAATTTGGGAAAGTAGGGGATGATACTTTCACTATGGATTACAGGAAGCCCCTATCTGCATTTCAAGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1149 0.4804 MFLRSIFRSRKFYRSFKEVRAIEEDEGKGRLCGDSDDVRDSMESPPYGCSWATMLPELLEEIIRRVDATEDQWPNRQNVVACAGVCKRWRDITKEIVRFPSRDSGRITFPSCLKQPGPRDPPHQCIIKRNKKTSTFHLYLALTPPSFTDKGKFLLAAKRYRRGSGIEYALSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCLMKFPNQSSGESSDSRSLEVHKTNNAGQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0698 382 ProSitePatterns Tub family signature 2. 367 382 IPR018066 -
Lele31g0698 382 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lele31g0698 382 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Lele31g0698 382 MobiDBLite consensus disorder prediction 261 281 - -
Lele31g0698 382 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Lele31g0698 382 PANTHER TUBBY-RELATED 49 380 - -
Lele31g0698 382 Gene3D Tubby Protein; Chain A 108 382 IPR025659 -
Lele31g0698 382 SUPERFAMILY F-box domain 48 95 IPR036047 GO:0005515
Lele31g0698 382 Pfam F-box domain 56 98 IPR001810 GO:0005515
Lele31g0698 382 Pfam Tub family 113 377 IPR000007 -
Lele31g0698 382 SUPERFAMILY Tubby C-terminal domain-like 104 382 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0698 Lele-ChrLele31 14830143 14833253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0698 50 382 TUB Transcription Factor Family AT1G53320 76.401 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele31g0698 Tub 5e-101 CL0395