Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0679 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTGTGCTGCGCGGACGAGGCGGCGCTATGTCGGCAATGCGACGAGAAGGTTCATGCAGCGAACAAGCTGGCTACCAAGCATCAGAGGGTTCCTCTATCTACCTCTTCCTCGCACATGCCTAAATGTGATATTTGTCAGGAAGCAGTTGGCTATTTCTTCTGTCTGGAGGACCGAGCCTTACTATGCCGAAAATGCGACGTGGCAATACACACAGCAAATTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTGGGTCTTGAAGCTACTGAGCCTGTTGCTCCATCGTCCTCTGTGAAGTCAGATTCTGGGGGGAGAGTGTCAGATACAATATCTACTTCTGTCTCCAAGAAGGTTCCTTCTACGCCTCAGCCATCTGAATACTATGAATTGTTACCTACTCAAGTCGGAGGAATTGAGGAGTTTCAGCCAACCAAAGTGTCTTATGGTGGTGGTTCTACTAACTGGCCGCTTGATGAATTGTTTTGTTTCAATGAATTCAGTCAGAATTTCAATTTTATGGACAATGTCAATCAACCATCCAAGGCTGAGAGCAGTAAGCTTGGGGATTCTGATTCTTCTGTTTTAAGATCTAGTGAAGAGGAAATGGATTATGATGATCACTTGGGGTGTGTTCCAGATTCGTCGTGGACGGTTCCTCAGATCCCTTCTCCTCCTACGGCTTCGGGCTTATATTGGCCAAAAGATCCTCGATATTCATCTGCTAATAATAATGCTATGTTTGTTCCTGACATATGCTCTCCTCACATCCAACAGCCTCTTCATGCTCAGAGAAATAGTACATTATCAAAGCGGCGAAGGTGA 882 0.4649 MKIQCNVCEAAEAEVLCCADEAALCRQCDEKVHAANKLATKHQRVPLSTSSSHMPKCDICQEAVGYFFCLEDRALLCRKCDVAIHTANSYVSAHQRFLLTGVRVGLEATEPVAPSSSVKSDSGGRVSDTISTSVSKKVPSTPQPSEYYELLPTQVGGIEEFQPTKVSYGGGSTNWPLDELFCFNEFSQNFNFMDNVNQPSKAESSKLGDSDSSVLRSSEEEMDYDDHLGCVPDSSWTVPQIPSPPTASGLYWPKDPRYSSANNNAMFVPDICSPHIQQPLHAQRNSTLSKRRR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0679 293 Gene3D Classic Zinc Finger 1 93 - -
Lele31g0679 293 MobiDBLite consensus disorder prediction 199 229 - -
Lele31g0679 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele31g0679 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 274 - -
Lele31g0679 293 CDD Bbox1_BBX-like 5 47 - -
Lele31g0679 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele31g0679 293 MobiDBLite consensus disorder prediction 213 228 - -
Lele31g0679 293 CDD Bbox1_BBX-like 56 99 - -
Lele31g0679 293 FunFam B-box zinc finger protein 22 1 93 - -
Lele31g0679 293 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Lele31g0679 293 MobiDBLite consensus disorder prediction 113 146 - -
Lele31g0679 293 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Lele31g0679 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele31g0679 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0679 Lele-ChrLele31 14686216 14688833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0679 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 46.269 1.23e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele31g0679 zf-B_box 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0851 29 5767520 5770056 Lele31g0679 31 14686216 14688833 hybridization
Lele30g0546 30 10308970 10311612 Lele31g0679 31 14686216 14688833 hybridization