Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0666 ATGGATCCCAATTATCATGGCTTGCCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACAAGAGCTCCAGAATCAACAGCGACATCACAATCACAAAACTCAGGATGAAGGCGCCGGCGTTTCCTGCTCAACCTTACCGGCAAAGAAGCGTAAGGAATCTCGAGATACAACATTTCTTTCCGATTCTCCAGTTTCAGTTTCTGTCAGCGCTTATTCGTTACCGGCCAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATGTTGGTGTTTCCTCCATTGACCTCAATGTTGAATACAAACCATCGATCGAGGAAGAAGTAAAATCAGTTGATGATGAACCCAATGATGCTGAGATTCCACTTGTAGTGAACTCCCTCGATGTTGAAAATGAAAATGAAAATGAAACTGAAAATGTTGAAGATGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACAGATGGGGATCCATCAGATCCAATTGTTCTTTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGCAATCCACTTGTAAAGGGAATACCAGAAGGTGATTGGTTCTGTGAAAAATGCAGAGTTTCATCGTCTTCTCAAACTAAGAACGATGATGAAAACAACATTTCTTGTTGCCTCTGTACTACTACGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCCCATATTGTGTGCGCGCTTTTAGTCCCTGAGGTGTTTTTCAAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCTAAGGTTCCCAAGAAGAGGTGGTCTGAGAAGTGTTATATTTGTGAATCTTCAAATGGGTGTGCCATTGTGTGTTCTGAGCTTAAGTGTCCTTTGGCTTTTCATGTCACTTGTGGGTTGAAAGAGGATCTTACCATTGAGTATCGTGAAGGGAAGAAGAATGCTACCATCGTTGCTGGTTTCTGCAAAAGCCACACTGAATTATGGAAAAAGCAACAGCTATCTGGAAAATACAGAATCGTTGCTGAAGAACACAAGTAG 1035 0.4348 MDPNYHGLPPLKRFRLIQQQQELQNQQRHHNHKTQDEGAGVSCSTLPAKKRKESRDTTFLSDSPVSVSVSAYSLPAKKRVWALQPDFASDVGVSSIDLNVEYKPSIEEEVKSVDDEPNDAEIPLVVNSLDVENENENETENVEDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCRVSSSSQTKNDDENNISCCLCTTTEGAMKPTVDERWAHIVCALLVPEVFFKDPEGREGIDCSKVPKKRWSEKCYICESSNGCAIVCSELKCPLAFHVTCGLKEDLTIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEEHK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0666 344 SUPERFAMILY FYVE/PHD zinc finger 137 201 IPR011011 -
Lele31g0666 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 326 IPR013083 -
Lele31g0666 344 MobiDBLite consensus disorder prediction 20 57 - -
Lele31g0666 344 CDD PHD_BRPF_JADE_like 149 197 - -
Lele31g0666 344 Pfam PHD-finger 149 199 IPR019787 -
Lele31g0666 344 SMART PHD_3 149 198 IPR001965 -
Lele31g0666 344 SMART PHD_3 269 324 IPR001965 -
Lele31g0666 344 ProSiteProfiles Zinc finger PHD-type profile. 147 200 IPR019787 -
Lele31g0666 344 PANTHER PHD FINGER PROTEINS 70 324 - -
Lele31g0666 344 ProSiteProfiles Extended PHD (ePHD) domain profile. 212 324 IPR034732 -
Lele31g0666 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 203 IPR013083 -
Lele31g0666 344 Pfam PHD-zinc-finger like domain 214 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0666 Lele-ChrLele31 14595125 14596778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0666 20 342 C2H2 Transcription Factor Family AT3G14740 55.457 7.46e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele31g0666 zf-HC5HC2H_2 4.9e-29 CL0390