Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0564 ATGTACAGAAGGCTTCGAAGGTTTGAGTCTGGTGTGACATCAGAGCCATTAAACAAAACAAGAGCATCTAAAGTAGTTTCTGGATGTGGAAGAGATCAGAAAGAAACAACAGGCAAAGATATTTTGAGCAAACTGAGGAAAGTAGATTTGGCAGATCAAGAATGGGTCAATAAGATTCCAGAGTGTCCAGTGTTCTTCCCATCAGAACAAGAGTTTGAGGATCCTTTAGTTTATCTGCAGAAGATTTTCCCTCAGGCACAAAAATATGGAATGTGCAAAATTGTTTCCCCCCTAAATGCCTCTATTCCAGCTGCTGTTGTGTTAATGAAAGAGATGGAAAAGTTCAAGTTTGAAACTATTGTACAACCTCTTCGGTTTTCTGAATTGAAAGAGATCAATGAAACAATCTATTCTCTCAGGGGCAGAAAATACACTTACCGTGATTTCGAGACTTTGGCGAACAAGGCCTTTCTCAGTCGGTTTTACAGTTCAGGAAGTCTTCCTTCTTCATATGTGGAAAAGTTGTTCTGGCATGAGATGGAGCATGGAGATCAGATGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCTTTTTCATGCGATCCTAATGACAAGCTTGCAAAAAGCAAATGGAATTTGAAGAATTTCTCGCGGCTGCAGAAATCTACATTGCGGTTCATTGACAAAGAGATTCCAGGAGTAACTGATCCTATGCTTTATATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAACTATCATCACTCAGGAGCAAATAAAACTTGGTACGGCGTTCCCAGCTATGCAGCGTCTCGATTCGAAGAGGTTTCCTTAGAACATGTCTTCCATAATAAGATTTTATCATCAAAACATGATGGAGAGGCTGGTGTCTTCCAAGCTCTTGCTCAGAAAACAACCATGTTTTCTCCAAATGTCTTGCTCCAACATAGTGTGCCAGTTTACAAGGTTATGCAGAAGCCTGGAGAATTTGTCATCACCTTTCCTAGATCATATCATGCTGGATTCAGTCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCAGTGGGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGGCTTTATGCACACCTGGGAAAGATGCCTATTATTCCCTTTGAGGAACTTCTTTATAATGAGGCAATGCTAATTTACAAGGCCCCAAATCATCTCAAAGGCTCCAATAATAACAAAGTCGATTTGGAATCCGACCATGCTATAAAGCTATCTTTTATGCAGCTCATACGATCTTATGACAAGGCCCTTTCAAGACTGGAAAAAGGTTCAACACAGTGTTCAATAAGTTCTTCAAATTCTCTAGGTACTGTTGTATGCAGCCTCTGCTGTAGAGACTGTTATGTGGCTTTCTTGCTCTGCAAGTATTGCAATTCTCAACCCATTTGTATTTTCCATGATGAAACTGAGACTCAGAATTGCTCTTGTGGTAGAAAATGTACACTTTTCAAGAGAGATGAAATGTTGGAACTGATGGATGCTGCTAGAAATGACTCAATTTTGACTCTAACCACTCCCACAGAATCTTCCCCAGCTTGA 1611 0.4029 MYRRLRRFESGVTSEPLNKTRASKVVSGCGRDQKETTGKDILSKLRKVDLADQEWVNKIPECPVFFPSEQEFEDPLVYLQKIFPQAQKYGMCKIVSPLNASIPAAVVLMKEMEKFKFETIVQPLRFSELKEINETIYSLRGRKYTYRDFETLANKAFLSRFYSSGSLPSSYVEKLFWHEMEHGDQMGTVEYGVNVEGSAFSCDPNDKLAKSKWNLKNFSRLQKSTLRFIDKEIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSYAASRFEEVSLEHVFHNKILSSKHDGEAGVFQALAQKTTMFSPNVLLQHSVPVYKVMQKPGEFVITFPRSYHAGFSHGFNCGEAVNFAVGDWFPLGAEATRLYAHLGKMPIIPFEELLYNEAMLIYKAPNHLKGSNNNKVDLESDHAIKLSFMQLIRSYDKALSRLEKGSTQCSISSSNSLGTVVCSLCCRDCYVAFLLCKYCNSQPICIFHDETETQNCSCGRKCTLFKRDEMLELMDAARNDSILTLTTPTESSPA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0564 536 Gene3D Cupin 62 428 - -
Lele31g0564 536 ProSiteProfiles JmjC domain profile. 207 382 IPR003347 -
Lele31g0564 536 PANTHER LYSINE-SPECIFIC DEMETHYLASE 54 520 - -
Lele31g0564 536 Pfam JmjC domain, hydroxylase 240 365 IPR003347 -
Lele31g0564 536 ProSiteProfiles JmjN domain profile. 62 103 IPR003349 -
Lele31g0564 536 SMART cupin_9 207 382 IPR003347 -
Lele31g0564 536 Pfam jmjN domain 63 95 IPR003349 -
Lele31g0564 536 SMART JmjN_1 61 102 IPR003349 -
Lele31g0564 536 SUPERFAMILY Clavaminate synthase-like 142 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0564 Lele-ChrLele31 13594924 13598339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0564 59 523 JUMONJI Transcription Factor Family AT2G34880 31.638 1.67e-65 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele31g0564 JmjC 1.4e-38 CL0029