LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele31g0532	ATGGAAGAAGAAGGCAACTCCAGCACGCAAGGATGTGTCATGGATTCTCCGGCTCCGGCATCGTCTTACCGGGGAGTTCGCAAGCGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCTGGCAAGAAAACTCGGATATGGTTAGGAAGCTATGAGACTCCGGAAATGGCGGCGGCAGCGTATGACGTCGCGGCTTCTCACTTCCGAGGACAGTCTGCGAAGCTTAACTTCCCGGAGTTTGGGGAAGTGTTTCCACGACCGGCGAGCTCCCGAGCGGAGGACGTACGGTTTGCAGCTCAACAAGCGGCATTGATGATGAGGAGACCGTTGAGAACAAGGGAGGCTACCGAAGACGGCGTAGCTCCTCTGGCAACAACGACGGTGGAGCTGTCACCTAGCCAGATTCAGGCGATCAATGAGTGCCCATTGGATTCACCAAAGATGTGGATGCAAATGTCAGGGTTTGATGAGTCAGTGGCATTATATAATCACGATGATAAAGAAGACGACTTGGAATTGACAAGTTGGGAACAAATACAAGATGATTCTATATGGGGTTTCTAA	567	0.5168	MEEEGNSSTQGCVMDSPAPASSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYETPEMAAAAYDVAASHFRGQSAKLNFPEFGEVFPRPASSRAEDVRFAAQQAALMMRRPLRTREATEDGVAPLATTTVELSPSQIQAINECPLDSPKMWMQMSGFDESVALYNHDDKEDDLELTSWEQIQDDSIWGF	188

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele31g0532	188	SMART	rav1_2	22	84	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	ProSiteProfiles	AP2/ERF domain profile.	22	79	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	CDD	AP2	21	80	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lele31g0532	188	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-
	Lele31g0532	188	Gene3D	AP2/ERF domain	22	80	IPR036955	GO:0003700\|GO:0006355
	Lele31g0532	188	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	20	149	-	-
	Lele31g0532	188	Pfam	AP2 domain	22	71	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	PRINTS	Ethylene responsive element binding protein signature	23	34	IPR001471	GO:0003700\|GO:0006355
	Lele31g0532	188	SUPERFAMILY	DNA-binding domain	21	79	IPR016177	GO:0003677
	Lele31g0532	188	MobiDBLite	consensus disorder prediction	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele31g0532	Lele-ChrLele31	13281505	13282071	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele31g0532	21	186	AP2-EREBP Transcription Factor Family	AT1G71450	51.445	1.03e-54	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele31g0532		AP2	1.4e-13	CL0081