Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0500 ATGAGAAAGAACGATAATAATGTGCAGATGGGGAGGGGAAAGATAGAGATAAAGAGGATAGAGAACACAACGAATCGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTTCCCTCATCGTCTTCTCCAATCGTGGTCGTCTCTACGAGTACTCCAACAACAACATAAGGTCAACTATTGAGAGGTATAAAAAGGCTTGTTCAGATCATTCCAGTACCAGCTCTCCTACTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAGATTCAAATGCTGCAAAGTTCTAACAGGCACTTGATGGGTGATGCCTTGAGCACTCTGAATGTGAAGGAACTTAAGCAGCTTGAGAATAGACTTGAACGAGGCCTCTCTAGAATCAGGTCCAAAAAGCATGAGATGCTGCTGGCAGAAATCGAATACCTACAGAAGAAGGAGGTTGAACTTGAAAATGAAAACCTTTGTATTCGGACTAAGATAGCACAAGTGGAGAGAGCAGAAGAAGAGATGGTGTCAGCATCATCAGCAGGGCAAGAGCTGAGTGCCATTCATGCTTTGGCTTCTAGAAATTACTTCATTGATACTAATCCATCTCCCTACACTCCTCCTACAACTGACCACAAGAATCTTCGCCTTGGGTAA 702 0.4302 MRKNDNNVQMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKACSDHSSTSSPTEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSTLNVKELKQLENRLERGLSRIRSKKHEMLLAEIEYLQKKEVELENENLCIRTKIAQVERAEEEMVSASSAGQELSAIHALASRNYFIDTNPSPYTPPTTDHKNLRLG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0500 233 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 178 - -
Lele31g0500 233 Coils Coil 130 172 - -
Lele31g0500 233 FunFam agamous-like MADS-box protein AGL11 22 105 - -
Lele31g0500 233 Gene3D - 22 120 IPR036879 GO:0003677|GO:0046983
Lele31g0500 233 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Lele31g0500 233 Pfam K-box region 95 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele31g0500 233 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele31g0500 233 CDD MADS_MEF2_like 11 87 IPR033896 GO:0000977|GO:0045944
Lele31g0500 233 SUPERFAMILY SRF-like 11 86 IPR036879 GO:0003677|GO:0046983
Lele31g0500 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0500 Lele-ChrLele31 13042486 13049765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0500 10 212 MADS-box Gene Family AT4G09960 76.214 4.95e-111 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele31g0500 K-box 3.7e-27 No_clan