Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0353 ATGAAGTCGGTGAGTCGGAGAGCATACTTCGGGTCTTCTCACCATCGCTCACCTCTGTACACAAAGGACCCAAAAGCTCATAGGCCTAAAGGATTTGGCATTGTCTCCTATGAGTCAGAAATTGAAGCAGGGAAGGTCATGAACTCCGTGAATGGAAGGGAGCTTGGAGATGCAAAATACCTAAGGGAAAGGCTTGCTAATGTGTCAGCTAATCTAGGTAGAGAACAACACATATCGATAAATTACCTTGAGAAGATCGTGTTTAGAGCGAGAACGGGAGGGAATACTTTACACTCTGATTCAGTTAAATATTGGAAGACTATGCCCAAGAAGAAGAAGCACAGTGACAGTGACGAAGAAGACATCTTCTATTACCGCTATGCTTCCGCTTCAGCTTCTTCAGCACCTTCCTCAAACCCCACTGGAACCCTGAAGGCTCACAGCGGCTCTGGCGGGTTAGCTCCCTCTAAATCTACTCTCTATGTCTCCAACCTCGACTTCTCCCTCACTAACTCCGATCTAAACACACTCTTCTCCACCTTCGGAAAGATCGCTCGAGTCACCGTTCTCAAGGACCGAGTCACTCGCCAAAGCCGTGGCGTTGCTTTCATTCAATACGTTTCTCGCGATGATGCACAAAAGGCTGCGCGTGAGATGAACCGCAAAATCCTCAATGGTAGGACCTTGGCTGCTTCCATTGCTGCTGATAACGGCCGAGCTCCAGAATTTATAAAGAAAAGGATTTATATGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGACATTTGTCTTATGAGTGTCCCAGGAATCAATTGGGGCCAAGGGAGCGTCCAGTTCCCAAGCGTGAACGACGTGGTGGTGGGGGTGGCCGTGGGGGTGCGTTCCGGCCGACGGAGGAGGAGGATGACGGATCTGATGGTGGGGATCGGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGCTGACGGGTAATGAGAAGGTTGTGGAGAAGAAGAAGGCAAAGAAAGCAAGCTATTTCAGTGATGAGAGTGGTGATGAAGATGATTGA 1074 0.487 MKSVSRRAYFGSSHHRSPLYTKDPKAHRPKGFGIVSYESEIEAGKVMNSVNGRELGDAKYLRERLANVSANLGREQHISINYLEKIVFRARTGGNTLHSDSVKYWKTMPKKKKHSDSDEEDIFYYRYASASASSAPSSNPTGTLKAHSGSGGLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAAREMNRKILNGRTLAASIAADNGRAPEFIKKRIYMDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRERRGGGGGRGGAFRPTEEEDDGSDGGDRFEDDNWASIVDNGADERLLTGNEKVVEKKKAKKASYFSDESGDEDD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0353 357 ProSiteProfiles Zinc finger CCHC-type profile. 254 270 IPR001878 GO:0003676|GO:0008270
Lele31g0353 357 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 113 356 IPR044598 GO:0000398|GO:0005689
Lele31g0353 357 CDD RRM_ZCRB1 157 234 IPR034219 -
Lele31g0353 357 SUPERFAMILY RNA-binding domain, RBD 155 241 IPR035979 GO:0003676
Lele31g0353 357 MobiDBLite consensus disorder prediction 266 357 - -
Lele31g0353 357 SUPERFAMILY Retrovirus zinc finger-like domains 240 271 IPR036875 GO:0003676|GO:0008270
Lele31g0353 357 SUPERFAMILY RNA-binding domain, RBD 22 61 IPR035979 GO:0003676
Lele31g0353 357 MobiDBLite consensus disorder prediction 328 350 - -
Lele31g0353 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 236 IPR000504 GO:0003723
Lele31g0353 357 MobiDBLite consensus disorder prediction 1 25 - -
Lele31g0353 357 Gene3D - 245 279 - -
Lele31g0353 357 SMART rrm1_1 159 232 IPR000504 GO:0003723
Lele31g0353 357 MobiDBLite consensus disorder prediction 132 153 - -
Lele31g0353 357 Gene3D - 145 314 IPR012677 -
Lele31g0353 357 SMART c2hcfinal6 254 270 IPR001878 GO:0003676|GO:0008270
Lele31g0353 357 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 107 242 - -
Lele31g0353 357 Pfam Zinc knuckle 254 269 IPR001878 GO:0003676|GO:0008270
Lele31g0353 357 MobiDBLite consensus disorder prediction 276 304 - -
Lele31g0353 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 57 IPR000504 GO:0003723
Lele31g0353 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 229 IPR000504 GO:0003723
Lele31g0353 357 Gene3D - 18 70 IPR012677 -
Lele31g0353 357 SMART rrm2_1 159 232 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0353 Lele-ChrLele31 10200243 10203636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0353 158 234 Eukaryotic Initiation Factors Gene Family AT1G49760 36.364 1.25e-07 51.6