Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0305 ATGTGTTCGGCTCTGTGTTTTTGCTTTAGGCTTGTGATTTGCATCCTTGCTAAACTGAGGCAAAATCTTGATTCAATGGATGAACTGGGTGAATTTGGAGAGAGGCCTATTTTCAGAGATATAAGACGCTATTTCTGTGAGTACTGTGGTATCTGTCGATCCAAAAAGACCCTGATAATCTCTCATATCAATTCTTGCCACAAGGAGGAGTTGGAAAGAGATGAGAAAGATCATGAAGCTGGGAGCACCATATCCAACACTTGCAAGGAATGTGGTGCTAGTTTCAAAAAGCCAGCCTATTTGGTGCAGCACATGCTAAGCCATTCTCTTGAGAGGCAATTTGTGTGTTCTATTGATGACTGTCAAGCCAGTTATAGAAGAAAGGATCACTTGAATCGTCACCTTCTGCAGCATAAAGGGAAAACTTTTAAATGTCCAATCATGGATTGCAACCGGGACTTTTCTTTCCAAGGGAATATGACAAGACATGTCAAACAATTTCATAATGGGAATTCCACCCCCTCTAAAGTTGAAACTCAGAAGCAGCATGAGTGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATATGCTTCAAAGCTACAAAAGCATGAAAATTGTCATGGCAAGAAAGTTGAGCGCACTTCTAAAGACTTTCTGTATTCTGCAGTTAAGCTGTACTCAATGGAGGTACTCTGCTTGGATCCTGGTTGCATGAAACATTTTACCAATGTCCAGTGCCTTAAAGCCCATATCAAAACCTGTCATCAATTTGTCACCTGTGAGACTTGTGGGAAAAAGGAACTGAGGAAGAATATCAAGCGGCACCTCCGTTCGCATGAAACTAGTTCTTCATCAAAGGCATTTAAATGTGAACACAAGGGTTGTAGCAGCACATTCACTAGTAAATCCAATCTTCATAAGCATGTAAAGGCTGTACACTTGAAAGAAAGACCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGCGAGGGACAACCATGAAAAGACACACGTTTATACACTTGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGCGAAAGAGAAATTGTCCTACTATTGAAATGTTAGTTAGGAAAAGGGTCTCTCCTCCCAATCAATTAGAGTTCTGTTTGTTTGGAGGGGATACAGAGTAG 1191 0.4114 MCSALCFCFRLVICILAKLRQNLDSMDELGEFGERPIFRDIRRYFCEYCGICRSKKTLIISHINSCHKEELERDEKDHEAGSTISNTCKECGASFKKPAYLVQHMLSHSLERQFVCSIDDCQASYRRKDHLNRHLLQHKGKTFKCPIMDCNRDFSFQGNMTRHVKQFHNGNSTPSKVETQKQHECPEIGCGKVFKYASKLQKHENCHGKKVERTSKDFLYSAVKLYSMEVLCLDPGCMKHFTNVQCLKAHIKTCHQFVTCETCGKKELRKNIKRHLRSHETSSSSKAFKCEHKGCSSTFTSKSNLHKHVKAVHLKERPFVCGFPDCGMRFSYKHARDNHEKTHVYTLGDFEESDEQFRSRPRGGRKRNCPTIEMLVRKRVSPPNQLEFCLFGGDTE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 145 168 IPR013087 -
Lele31g0305 396 SMART c2h2final6 288 313 IPR013087 -
Lele31g0305 396 SMART c2h2final6 319 343 IPR013087 -
Lele31g0305 396 SMART c2h2final6 258 279 IPR013087 -
Lele31g0305 396 SMART c2h2final6 230 255 IPR013087 -
Lele31g0305 396 SMART c2h2final6 183 207 IPR013087 -
Lele31g0305 396 SMART c2h2final6 114 138 IPR013087 -
Lele31g0305 396 SMART c2h2final6 143 168 IPR013087 -
Lele31g0305 396 SMART c2h2final6 86 108 IPR013087 -
Lele31g0305 396 SMART c2h2final6 44 67 IPR013087 -
Lele31g0305 396 Gene3D Classic Zinc Finger 141 169 - -
Lele31g0305 396 Pfam Zinc finger, C2H2 type 87 108 IPR013087 -
Lele31g0305 396 Pfam Zinc finger, C2H2 type 143 168 IPR013087 -
Lele31g0305 396 Pfam Zinc finger, C2H2 type 114 138 IPR013087 -
Lele31g0305 396 Pfam Zinc finger, C2H2 type 183 204 IPR013087 -
Lele31g0305 396 Gene3D Classic Zinc Finger 115 140 - -
Lele31g0305 396 SUPERFAMILY beta-beta-alpha zinc fingers 271 323 IPR036236 -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 173 IPR013087 -
Lele31g0305 396 Gene3D Classic Zinc Finger 316 343 - -
Lele31g0305 396 Gene3D Classic Zinc Finger 35 114 - -
Lele31g0305 396 SUPERFAMILY beta-beta-alpha zinc fingers 124 171 IPR036236 -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 116 138 IPR013087 -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 321 343 IPR013087 -
Lele31g0305 396 Gene3D Classic Zinc Finger 170 257 - -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 290 313 IPR013087 -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 212 IPR013087 -
Lele31g0305 396 Gene3D Classic Zinc Finger 261 315 - -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Lele31g0305 396 SUPERFAMILY beta-beta-alpha zinc fingers 87 138 IPR036236 -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 318 IPR013087 -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 319 343 IPR013087 -
Lele31g0305 396 PANTHER ZINC FINGER PROTEIN 32 384 - -
Lele31g0305 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 143 IPR013087 -
Lele31g0305 396 SUPERFAMILY beta-beta-alpha zinc fingers 313 344 IPR036236 -
Lele31g0305 396 ProSitePatterns Zinc finger C2H2 type domain signature. 185 207 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0305 Lele-ChrLele31 3533022 3536185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0305 110 346 C2H2 Transcription Factor Family AT1G72050 49.485 2.45e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g0305 zf-C2H2 0.0017 CL0361