Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0277 ATGACGTGTCGGATTACCATTGGTCTTGATGCATGCATATATGTCGGGCATGGTGTGGTCTGCATAGACAGTGGATTAACTAGGGTTTCCATGAGTCCACCTGCTGAGGAGAAGATGGACGATGGTAAGCCATTTGCTGTCTCAGCCAACAGCTCACAGGTCCACGGCGAACATGGTGACCCTGCTGACTCTCGTTTCACTGAATTCTGCAAGAATGGGTTATCATTGGATTTTGAAAGTTGCAGACAAGCTATGAAGCTGTTCACAGAAACCAAACACCTTCTACAGGCCAATGTGTCATCTCTTGGCAATGGAACGTACGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTGTACTGTGTCACTAGATTGGCTGATAAGCATATAGACAGTGAGAAGAAAGTGATCGATAGCAATGGACTTACCTTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGACTTCTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGCGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTATAAGCGTGCATTTGGGGAGTTATTCTTGGTAAATGATGCTATTGAAAAAAATTCAGCTGTTTCCATGACTGGTGGTTATGCATCTCAATATCATCGATTTGGATGGTTGTTATTTTTGGCTCTTCGTGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCTCGCTTCAGAAATTTTAACATTCATGACGCATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGTAACATCTATGAGACTTCAGAAGATGATGTGAGGAAAACTATGGAAAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTCTGGCATCTGAATGTAAAACTGCAACACTTGAGAATATTGACAAAGATGGCTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCTTGTTTAAATATTTTAGAAAAAGATTATGATGATGCCATTCGAAACAAGGGTGAGCTGGATGAGAGGTTGTTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCCATGTCAACAAGTGGTGTCAAGAGGAAATTTGATTCAATGGCGTCACCTGCAAAGACAGTTGCAAATCCACTCTCTCCCCAACGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCGCAAATTCAAAGATGGCAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATAGGTCCTCTTTTATCAAAGCCTTCACCTGAGCTGGAGAAATTTCTAGCATCATGTGATAGGGACGTCACAAGTGATGTAGTTCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTACTAGTCCTTTAGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGTGCAAACCTGATGGACAATGTTTGGGCTGAACAACGGAGACTGGAAGCCATGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAGGCCCAAATACTGCATGCAACCAATTTAACCTCGTTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACTGTGACAATGCTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTCATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCAATGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCAGAAATAACTCGACTTGGATTGCTAGCTGAACCAATGCCATCATTAGATGCAATTGCAACGCAAATTAACTTCTCTTGTGGGGGGCTGCCCACTGGGCCTTCCTTACATAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCCCCAAAACGAATCTGCACAGAATATCAGAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTATTCCCTTCAGTAACCTTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACTTGCGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCGGCAGTCAGAATGAGTGGCATGGTTGAAAGGCTCCAGTTGTCTCAACAAATAAGAGAGAACGTTTACTGTCTTTTTCAACAAATACTAAATCAAAGGACATCACTTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATCGCAAAGATTTCTCAGCTAAACTTGACTTTTAGGGAGATCATTTACAACTACAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACGCGCCGCAATGGGAGAACTGGCCAGGAGCATGTTGATATCATAACATTTTACAATGAAATATTTATTCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAGCCAATCGAATACCTGAAGTCAACAATAACAGTGATGGCCATTTGGCTCAGTGTCCTGGATCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCCAAGAAAGTATCTGCATCACACAATGTTTATGTCTCACCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGATCTGACCGCCATCAATAACCGTTTAAATGGCACCCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGTTTGGTGAGTGATTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGCGCGTCGTCATCTGGAGCACCAGTGAAGTCTGAGCAGCCAGACAGTTGA 3189 0.4233 MTCRITIGLDACIYVGHGVVCIDSGLTRVSMSPPAEEKMDDGKPFAVSANSSQVHGEHGDPADSRFTEFCKNGLSLDFESCRQAMKLFTETKHLLQANVSSLGNGTYEEAERYWFSFVLYCVTRLADKHIDSEKKVIDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWENRLEAKELHANFLHLSILSKYYKRAFGELFLVNDAIEKNSAVSMTGGYASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDASRFVKKSSKGVDIIASLCNIYETSEDDVRKTMEKANNLIADILKKKPCLASECKTATLENIDKDGLFYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSTSGVKRKFDSMASPAKTVANPLSPQRSPASHHANGIPISANSKMAATPVTTAMTTAKWLRTVIGPLLSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPTSPLGERCLTGSLQSANLMDNVWAEQRRLEAMKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSMEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATQINFSCGGLPTGPSLHKPETLPSQNGDIRSPKRICTEYQSVLAERNSFTSPVKDRLIPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRMSGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEVNNNSDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0277 1062 Coils Coil 368 388 - -
Lele31g0277 1062 SUPERFAMILY Cyclin-like 778 950 IPR036915 -
Lele31g0277 1062 Gene3D - 234 392 - -
Lele31g0277 1062 SUPERFAMILY Cyclin-like 464 659 IPR036915 -
Lele31g0277 1062 MobiDBLite consensus disorder prediction 426 445 - -
Lele31g0277 1062 SMART RB_A_2 456 657 IPR002720 GO:0005634|GO:0051726
Lele31g0277 1062 SMART DUF3452_2 125 273 IPR024599 -
Lele31g0277 1062 Pfam Retinoblastoma-associated protein A domain 456 657 IPR002720 GO:0005634|GO:0051726
Lele31g0277 1062 Gene3D - 459 647 - -
Lele31g0277 1062 FunFam Retinoblastoma-related protein 1 234 392 - -
Lele31g0277 1062 Gene3D - 738 931 - -
Lele31g0277 1062 Pfam Retinoblastoma-associated protein B domain 780 907 IPR002719 GO:0005634|GO:0051726
Lele31g0277 1062 FunFam Retinoblastoma-related protein 1 731 943 - -
Lele31g0277 1062 Pfam Domain of unknown function (DUF3452) 135 273 IPR024599 -
Lele31g0277 1062 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 62 1060 IPR028309 GO:0006357|GO:0051726
Lele31g0277 1062 FunFam Retinoblastoma-related protein 1 459 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0277 Lele-ChrLele31 2975714 2982890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0277 58 1062 Core Cell Cycle Gene Families AT3G12280 70.739 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lele31g0277 RB_A 7.5e-64 CL0065