Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0273 ATGCCGGCAGAGACCCAGTTTCATGTTTTGGCTGTTGATGACAGCATCATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCATCCTTCCAAGTTACTGCAGTGGATTCTGGGAGCAAGGCTTTGAAATTTCTTGGTTTAAAAGAAGATGAACAGAGAAAAGCTTCTAATTGCCATCAGGATTTGGAAGTAAATCTGATCATAACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTACTGAGAAAAATCAAGGAATCTGAATCTCTCAAAAACATACCAGTGGTAATTATGTCCTCAGAGAATGTCCCATCAAGGATCAACAGATGCTTAGAAGAAGGAGCTCAAGAATTTTTCCTGAAACCTGTTCAACAGTCAGATGTAAACAAGCTCAAGCCACATTTGATGAAATCAAGAGTTCAGGAAGAGGGAGACCAAATCATCAATAACAAAAGGAATGAAATGGAGGAAGAAGAAACCCATTCACCAGAGAAAACAAGAGCAAAAATATAG 519 0.3911 MPAETQFHVLAVDDSIIDRMLIERLLKTSSFQVTAVDSGSKALKFLGLKEDEQRKASNCHQDLEVNLIITDYCMPEMTGYDLLRKIKESESLKNIPVVIMSSENVPSRINRCLEEGAQEFFLKPVQQSDVNKLKPHLMKSRVQEEGDQIINNKRNEMEEEETHSPEKTRAKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0273 172 ProSiteProfiles Response regulatory domain profile. 8 138 IPR001789 GO:0000160
Lele31g0273 172 SMART REC_2 7 137 IPR001789 GO:0000160
Lele31g0273 172 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 155 IPR045279 GO:0009736
Lele31g0273 172 SUPERFAMILY CheY-like 6 139 IPR011006 -
Lele31g0273 172 MobiDBLite consensus disorder prediction 139 172 - -
Lele31g0273 172 Pfam Response regulator receiver domain 9 130 IPR001789 GO:0000160
Lele31g0273 172 CDD REC_typeA_ARR 9 133 - -
Lele31g0273 172 Gene3D - 8 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0273 Lele-ChrLele31 2900333 2901423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0273 1 164 Response Regulator Gene Family AT3G57040 62.573 3.18e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele31g0273 Response_reg 6.4e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1304 29 19620622 19621717 Lele31g0273 31 2900333 2901423 hybridization
Lele30g0231 30 2840091 2848632 Lele31g0273 31 2900333 2901423 hybridization