Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0272 ATGTCTGAAGTCAGTCCTCATTTATCATTACATTTGGACGACGAAGGCGTCGATCCTGCTTCGGCGACGGCGACCCAGAGGTCGGACCTTCCGCTTCTGGAATTCTACTCATGGTTGAGAGATTTAGTTGTGCTTGTTGTAGCAGCAGTGCTTGACCGCTTTTTGTCTCTGAATCACCCAAATTTCCTTTTCCCAAATTGTAATTGCTTCTTGGATATTTTTGTTATGGTTGTTCTTCAAAGTCCCACCCAGTTCATCCTGAGCCTATGCGCAATCGTAGTGAAGGGTAATTGGAGTAATCTGTTGAAGCTGGAGAAGGCTTCTGCTCTCACTTCTTCCACCATTCACCAGGTACTTCTGCAACTCTCTCTCCATGGCTTTGCTCCATCTCGTTCCTTCTCATTCTTCAAGTGGGTCGAGACAATTCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTACATATCCTCGTAAAGCATAAACATTTTAGAACTGCACAAGAGATGCTTGAGAAAATTGCCCACAGGGATTTTCTTTCCTCGCGGTCCGTTTTGAGAACTTTGATTGAAATTCAATATGACCCAGAAGTGAATTCGCATATATTGAGCTGGCTTGTAATACATTATGCAAAATCAAAGATGACCGATGATGCCATTCAGGTTTTTGAGCAGATGAGGATATATAAGTTGAACCCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCTTTGGTCAAGGATGGGGTTACTTACATGGTTTGGAAGGTTTACAAACAAATGGTTAAAGCTGATGTTTTTCCTAATATACATATCTATAATGTGTTAATCCATGCTTGTTCCAAATCAGGAGATGTAGATAGGGCAGAACATTTACTGAATGAGATGGAAATGAAGGGTGTGTTTCCTGATATTTTCACTTACAATACTTTGATATCATTATATTGCAAGAGAAGTATGCACTACGAGGCTTTATCTATCCAGGAGAGAATGGAAAGAGAAGGAATAAATCTTGACATTGTTAGTTACAATTCTCTTATTTACGGATTTTGTAGAGAAGGTGGGATGAGAGACGCCATGAGGATATTCAACAACATCAAAGGGACAATTCCTAATAATGTTACATATACTACATTGATTGATGGGTATTGTAAAACAAATGACCTGGAGCAAGCTCTGAAATTGTGTGAGATGATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGCTGTGTCAGGATGGAAAAATAAGAGAGGCAAATAAACTCTTGACCGAGATGAGTGAAAGAAAAATTCAGCCTGATAATGTTACATGTAACACGTTGATTAATGCTTATTGCAAGATAGGAGATATGAAATCTTCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGATTGAAACCTGACCCATTTACTTATAAAGCATTAATTCATGGGTTCTGCAAGATAAAAGAGCTGGAAAGAGCCAAGGATATGTTGTTTTCCATGCTTGATGCTGGGTTTTCCCCCAATTATTACACTTATTCATGGATCGTAGATGGTTACTGCAATAAAGACAATGAAGATGCAGTTGTTACACTCCCTGATGAGTTTCTTAGAAGAGGTCTTTGTGTTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAGTTAGAAAGGATACAATGTGCTCTGAAGTTATTTAATCTTATGGAAGGGAGGGGAATATTAGGTGACAGCGTTGTCTTCACAAGTCTTGCTTATGCTCATTGGAAATTCGGGAATGCAAAGTTTGCGTCAAATATATTAGAAGAGATGAGCAGAAGGAGGGTGATGATAACAAGCAAAATCTACAAATGTTTTGGTAATCCTCTTGATAGTGAAAAACACACTTCATGTTCATTCTGGAATTATGCAGCGGAAAGGGGCCTTATGTCAAGAAATACAATGAATAAAATAAAGCAAATGGAATCATGA 1989 0.3846 MSEVSPHLSLHLDDEGVDPASATATQRSDLPLLEFYSWLRDLVVLVVAAVLDRFLSLNHPNFLFPNCNCFLDIFVMVVLQSPTQFILSLCAIVVKGNWSNLLKLEKASALTSSTIHQVLLQLSLHGFAPSRSFSFFKWVETIPNYKHSLQCSWSMLHILVKHKHFRTAQEMLEKIAHRDFLSSRSVLRTLIEIQYDPEVNSHILSWLVIHYAKSKMTDDAIQVFEQMRIYKLNPHLHACTVLLNSLVKDGVTYMVWKVYKQMVKADVFPNIHIYNVLIHACSKSGDVDRAEHLLNEMEMKGVFPDIFTYNTLISLYCKRSMHYEALSIQERMEREGINLDIVSYNSLIYGFCREGGMRDAMRIFNNIKGTIPNNVTYTTLIDGYCKTNDLEQALKLCEMMQAKGLYPGVVTYNSILRKLCQDGKIREANKLLTEMSERKIQPDNVTCNTLINAYCKIGDMKSSLKFKNKMLEAGLKPDPFTYKALIHGFCKIKELERAKDMLFSMLDAGFSPNYYTYSWIVDGYCNKDNEDAVVTLPDEFLRRGLCVDVSIYRALIRRLCKLERIQCALKLFNLMEGRGILGDSVVFTSLAYAHWKFGNAKFASNILEEMSRRRVMITSKIYKCFGNPLDSEKHTSCSFWNYAAERGLMSRNTMNKIKQMES 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Lele31g0272 662 SUPERFAMILY HCP-like 380 527 - -
Lele31g0272 662 Pfam PPR repeat family 269 318 IPR002885 -
Lele31g0272 662 Pfam PPR repeat family 372 420 IPR002885 -
Lele31g0272 662 Pfam PPR repeat family 442 491 IPR002885 -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lele31g0272 662 MobiDBLite consensus disorder prediction 1 22 - -
Lele31g0272 662 Pfam PPR repeat 211 228 IPR002885 -
Lele31g0272 662 Pfam PPR repeat 551 580 IPR002885 -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Lele31g0272 662 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 134 500 - -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 342 367 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 551 583 IPR002885 -
Lele31g0272 662 TIGRFAM PPR: pentatricopeptide repeat domain 238 270 IPR002885 -
Lele31g0272 662 Pfam PPR repeat 336 365 IPR002885 -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Lele31g0272 662 Gene3D Tetratricopeptide repeat domain 439 535 IPR011990 GO:0005515
Lele31g0272 662 Gene3D Tetratricopeptide repeat domain 536 638 IPR011990 GO:0005515
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 370 IPR002885 -
Lele31g0272 662 Gene3D Tetratricopeptide repeat domain 368 438 IPR011990 GO:0005515
Lele31g0272 662 Gene3D Tetratricopeptide repeat domain 299 367 IPR011990 GO:0005515
Lele31g0272 662 Gene3D Tetratricopeptide repeat domain 117 298 IPR011990 GO:0005515
Lele31g0272 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0272 Lele-ChrLele31 2897496 2899591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0272 404 654 Glycosyltransferase AT1G05670 29.183 1.57e-27 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1305 29 19622438 19625730 Lele31g0272 31 2897496 2899591 hybridization
Lele30g0230 30 2837703 2839223 Lele31g0272 31 2897496 2899591 hybridization