Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0261 ATGGTGACCATGGTTTATTTAGTAGATAACTTTGATATATTGCTTGAGTTGGCCTTGGTTTTTCCAAATGGTATTTACATTGTTGTGATGGAATTTAGAATTGAAACTTGGCTTGGGACTTTAGTGTTGATGGGACTGGTGGTTGCTTGTACTAGCATGGCTTCTAGCAATCCATACTTTGATGATATACGGAGCAAATCTGAGGTTGATCCTCCTTCAAATGAGGAGCCAATGGATATCAGTGAGCTAGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGCTTGAATGCCATGTACCCTCCTATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCGTCTTTAGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCGTATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCACTGTCATTGGTGATATTCCTTTTTTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAATGCCACATGGATGCTTACGGTACAGTATTCTTTTCCCAACTCCAATTCTGTTATCTTAGTCCTGCCTTCTATTGGCCTTGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCTTTTCAGCAGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATATATGGGCGATGATAATGAGGCAAAGAACTATAGCTACAGTCTCGAGGTTGGCGGTAACGGGAGGAAGATGACATGGCAGGGTGTGCCAAGAAGCATCAGGGACAGCCACCGAAAGGTTCGTGACAGTTTTGACGGTCTTATAATCCAAAGGAACATGGCTCTGTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGAGTTACAGGGAGAATTTGGAAAGAACAGTGA 1131 0.4306 MVTMVYLVDNFDILLELALVFPNGIYIVVMEFRIETWLGTLVLMGLVVACTSMASSNPYFDDIRSKSEVDPPSNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVQYSFPNSNSVILVLPSIGLVFSCFGQYFCLHFEAFQQGMAPVYIAFLRYMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0261 376 SUPERFAMILY TRAF domain-like 161 373 - -
Lele31g0261 376 FunFam E3 ubiquitin-protein ligase SINAT3 160 216 - -
Lele31g0261 376 SUPERFAMILY RING/U-box 102 149 - -
Lele31g0261 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 216 IPR013083 -
Lele31g0261 376 FunFam E3 ubiquitin-protein ligase SINAT5-like 66 159 - -
Lele31g0261 376 CDD RING-HC_SIAHs 106 144 - -
Lele31g0261 376 ProSiteProfiles Zinc finger SIAH-type profile. 161 221 IPR013010 GO:0008270
Lele31g0261 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 160 IPR013083 -
Lele31g0261 376 FunFam E3 ubiquitin-protein ligase SINAT5-like 265 369 - -
Lele31g0261 376 Pfam Seven in absentia protein family 150 369 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele31g0261 376 ProSiteProfiles Zinc finger RING-type profile. 108 144 IPR001841 -
Lele31g0261 376 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 91 375 - -
Lele31g0261 376 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 267 369 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0261 Lele-ChrLele31 2661088 2664521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0261 99 376 C3H Transcription Factor Family AT2G41980 72.662 3.14e-154 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1314 29 19794633 19798864 Lele31g0261 31 2661088 2664521 hybridization
Lele30g0226 30 2775559 2779705 Lele31g0261 31 2661088 2664521 hybridization