Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0195 ATGCCTTCTTCAGGGACCGACAACGAGGCAACTGGCTGGGTCATCCCTGTGGGGACCACGGAAAACTTGGGAAGGATGCCAGGAAAACCTGATGTGGAAGATAGGAGGTATGAAGGAGGAGGGCAGATTCAGTTTCAATCAGGAATTTACTCTCAGCCATGGTGGCGTGGTGTAGAGGAAAATGCCTCTAAATCATCTTCACCAGGATTTCAGATAAGTGGTTCAGTCATGGATTCATCAGCAGCTAATGAAGGATCAGATAAACTTGATTTTCGTAAGCAAACACAGCCTATGGTTTCACCTTCACTTTCTGCAGTTGGTACTTTTGGTGTCTGTGGGAATGCCAACAAAGAGCACCAAAACAACAAATATGTCATGTCCTCTGCACCACATGCCATGCACCTTGGTTCAAATTCCCAAGTCGGTCATTCGATTTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGACAGTCACGTGCTAAGGCAGAGCTCGAAAGGAAAGTTATAAAAGTTAGAAAGAAGGGCAAGAGGGTGTGGGGGCCGCTTTCTGAATACAAAGAAGCTTGA 636 0.456 MPSSGTDNEATGWVIPVGTTENLGRMPGKPDVEDRRYEGGGQIQFQSGIYSQPWWRGVEENASKSSSPGFQISGSVMDSSAANEGSDKLDFRKQTQPMVSPSLSAVGTFGVCGNANKEHQNNKYVMSSAPHAMHLGSNSQVGHSILYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKKGKRVWGPLSEYKEA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0195 211 ProSiteProfiles NF-YA/HAP2 family profile. 161 211 IPR001289 GO:0003700|GO:0006355
Lele31g0195 211 Coils Coil 177 197 - -
Lele31g0195 211 Gene3D - 161 208 - -
Lele31g0195 211 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 197 IPR001289 GO:0003700|GO:0006355
Lele31g0195 211 SMART cbf3 160 211 IPR001289 GO:0003700|GO:0006355
Lele31g0195 211 MobiDBLite consensus disorder prediction 61 82 - -
Lele31g0195 211 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 77 197 IPR001289 GO:0003700|GO:0006355
Lele31g0195 211 MobiDBLite consensus disorder prediction 61 86 - -
Lele31g0195 211 MobiDBLite consensus disorder prediction 1 36 - -
Lele31g0195 211 MobiDBLite consensus disorder prediction 1 15 - -
Lele31g0195 211 ProSitePatterns NF-YA/HAP2 subunit signature. 166 186 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0195 Lele-ChrLele31 1926849 1931395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0195 46 196 CCAAT-HAP2 Transcription Factor Family AT5G12840 35.385 2.88e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele31g0195 CBFB_NFYA 1.7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1382 29 20536162 20539343 Lele31g0195 31 1926849 1931395 hybridization
Lele30g0175 30 1782052 1785315 Lele31g0195 31 1926849 1931395 hybridization