Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0189 ATGTGCAGCGGTCCAGATAAATCAAAATCCTCTCCAACTTCATCTTCATCTTCATCTACTCTAGAAGGCGCAACTAACATCAAAGACATGAAAAAGCTAACTGTTCATACAGAAGATTCTTTTTCCAGCTTACTGGAACTTGCTGCTAACAATGATGTTGAAGGTTTTAAGCTACTGCTAGATAGGGATGTTTCTTCAATAAATGAAGTTGGGATTTGGTATTGTCGCCAAATTGGGTCAAAGCAAATTATTCTTGACGATAGAACTCCATTAATGGTTGCTGCAACCTATGGTAGCATGGATGTTCTTAAGCTTATACTCTCTTATCCAGAGGCCAATGTTAATTTCACATGTGGGATAAGCAAGAATACTGCCCTTCACTGTGCTGCTTCAGGCGGATCTAATAATGCGGTTGATGTTGTGAAGCTTCTTCTAGAAGCTGGTGCTGATCTTAGTTGCAAGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCAACCGAAGCTGCAAGTCATGAGAGCAATACTGGAAGAACTTCTTTCTGATAGTGCGTATCATGACTCCACTGGTGACTGCTCTATTCCAGTGCCTGTTAATCCATCAAGTCCTGGTTTACCTGCCCATTTATTTTCTCCCGAGAATGGATTACCATCCTCTCCTTCAGGCTCACCTTCTTCTCCAGTTGCCTCAAAGTTCCCTGATATGCCTGTTAGTTCTACGTCGGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCTGACATAAAAAACAGCATTTATGCGACAGATGAGTTTCGCATGTTCTCATTCAAGGTCCGTCCTTGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTCGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAATTCCATTACAGCTGTGTGCCTTGCCCTGATTTTCAGAAGGGGGCTTGTAGGCGAGGGGATATGTGTGAATATGCACATGGTGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGGCTCTGCAAAGATGGCACAAACTGTAACAGAAGGGTGTGTTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTGTCCCTTCTCCACGAGCATCTGCCTCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAACCTGTTGCCTGGTTCTCTTTCATCTATGTCTTCTATGTCTCCATCTCACTTTACCCAGCCGATGTCTCCATCTGGTAATGGCATCTCACACTCATCTGGAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCACCTTCCAGGAAGTAATCTTCAATCTAGTCGCTTGAGATCTTCTCTTAGTGCTCGTGACATTCCACCACAAGGCTTGAACATGTTGCCAGAATTTGATGGCCAGCAACACCTCTTGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTGGTACTGTTGCTTTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTTTTTTCTAATGAAATTTCTTCATCTCCTCGGTATTCTGATCCAGCAGCGGGTTCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGATTCAAAGTATGCTATCACCAATAAATACAAATGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAGGCTCCATTTGGTTTGTCTTCTCCTGGAAGGATGTCGCCCAGAAGTGTGGATCCAATATCTCCTATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAACAGCACCAGCAGCAACAGCTGCGAAGTCTTAGTTCAAGGGAACTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGAAACTCATGGTCTAATTGGGGATCTCCTACTGGGAAAGTTGATTGGTCAATGAATGGAGATGAATTGGGTCGATTGCGAAAATTCTCTTCATTTGACCATGGGAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTCGTCAAGGAATCCCCACCTGAGATGATGAAGGAGAAGCGGGGAGCTTCTGGTCCCATGGCATCTGCGGAAAAACTGAATTCAATATCTCAAGTTGAATCCGTTGATAATTCTGTGGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTAA 2205 0.4503 MCSGPDKSKSSPTSSSSSSTLEGATNIKDMKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSINEVGIWYCRQIGSKQIILDDRTPLMVAATYGSMDVLKLILSYPEANVNFTCGISKNTALHCAASGGSNNAVDVVKLLLEAGADLSCKDANGNRPVDVIVVQPKLQVMRAILEELLSDSAYHDSTGDCSIPVPVNPSSPGLPAHLFSPENGLPSSPSGSPSSPVASKFPDMPVSSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSMSSMSPSHFTQPMSPSGNGISHSSGAWPQPNVPALHLPGSNLQSSRLRSSLSARDIPPQGLNMLPEFDGQQHLLNDLGCFSQPRPGTVALNRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQIQSMLSPINTNVLSPKNAEHPLLQAPFGLSSPGRMSPRSVDPISPMSSRLSPFAQREKQHQQQQLRSLSSRELGSKIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKFSSFDHGNNGEEPDLSWVQSLVKESPPEMMKEKRGASGPMASAEKLNSISQVESVDNSVVGAWLEQMQLDQLAV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0189 734 MobiDBLite consensus disorder prediction 216 239 - -
Lele31g0189 734 MobiDBLite consensus disorder prediction 206 250 - -
Lele31g0189 734 ProSiteProfiles Zinc finger C3H1-type profile. 311 333 IPR000571 GO:0046872
Lele31g0189 734 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Lele31g0189 734 SUPERFAMILY Ankyrin repeat 35 180 IPR036770 -
Lele31g0189 734 MobiDBLite consensus disorder prediction 1 22 - -
Lele31g0189 734 FunFam Zinc finger CCCH domain-containing protein 66 264 332 - -
Lele31g0189 734 PANTHER UNKEMPT FAMILY MEMBER 46 685 IPR045234 -
Lele31g0189 734 Gene3D - 16 197 IPR036770 -
Lele31g0189 734 PRINTS Ankyrin repeat signature 140 154 IPR002110 GO:0005515
Lele31g0189 734 PRINTS Ankyrin repeat signature 87 102 IPR002110 GO:0005515
Lele31g0189 734 MobiDBLite consensus disorder prediction 442 462 - -
Lele31g0189 734 MobiDBLite consensus disorder prediction 408 434 - -
Lele31g0189 734 SMART ANK_2a 121 153 IPR002110 GO:0005515
Lele31g0189 734 SMART ANK_2a 86 116 IPR002110 GO:0005515
Lele31g0189 734 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lele31g0189 734 Pfam CCCH-type zinc finger 311 331 IPR041367 -
Lele31g0189 734 MobiDBLite consensus disorder prediction 570 619 - -
Lele31g0189 734 Gene3D - 306 369 - -
Lele31g0189 734 Pfam Ankyrin repeats (3 copies) 47 155 IPR002110 GO:0005515
Lele31g0189 734 MobiDBLite consensus disorder prediction 588 619 - -
Lele31g0189 734 MobiDBLite consensus disorder prediction 408 463 - -
Lele31g0189 734 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Lele31g0189 734 SMART c3hfinal6 306 332 IPR000571 GO:0046872
Lele31g0189 734 SMART c3hfinal6 341 364 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0189 Lele-ChrLele31 1864062 1866266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0189 38 731 C2H2 Transcription Factor Family AT5G12850 55.650 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele31g0189 Ank_2 3e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1385 29 20600425 20602623 Lele31g0189 31 1864062 1866266 hybridization
Lele30g0169 30 1721260 1723371 Lele31g0189 31 1864062 1866266 hybridization