Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0187 ATGGCAGACAATCATGGCAGTACTGTGCATGAGTCTAATAATAACAAGTGGAAGATGCCTCTCCTTGTTTTCTTCACAGATGCAAGAAAAGTGTTGAAGCTGGATTCAATTGGGCGAGAATTACTGGGAATTGCAATTCCTGCTGCTTTGGCTGTGGCTACTGATCCCATTGCTTCTCTCATTGACACTGCTTTCATTGGTCACTTGGGACCTGTGGAACTTGCTGCTGCTGGAATTTCCATAACACTGTTCAACCAAGCTTTAGGAATAACCATTTTCCCTCTGGTTAGTGTCACAACTTCATTTGTTGCAGAGGAAGATACTCTCAAGAAAATTACAGACATTGAAAATGGTTTACCCAACAAAGAGAATAATAATAATGATGATGAGAGTTATTTGGGACGACAACCTGCGACTGCAAACAATATTGAAATGAATTATTCCTTGCCCAAAGCCTCTGTGAATGACAATGTGGTGAAGAAGAATAGCGATAAGAATATCAACACAAACAGTATTTCCAACTCTTCTACCTTGGCTGCAAGTTGTAAGAATAAGAGTAAGAAGAAGAAGAAACAAATAGCTTCAGCATCAACAGCATTAATATTTGGGACAATCCTTGGCCTCCTTCAAGTTTCAATCCTTATATTTGCAGCAAAACCACTATTACTTGCCATGGGTGCCAAACAAGGCTCTGATATGCTGAATCTTGCGGAAAAGTACTTGAAATTAAGAGCACTAGGGGCTCCAGCTGTTCTTCTGGGTTTAGCCATGCAAGCAATCTTCCGAGGTTTCAAGGACACCAAAACTCCCTTATATGTTATTGTGCTCGGGTATGCCCTAAATGTGGGTTTGGATCCCGTACTTATATTTTACTGCAAGTTAGGCCTCAATGGTGCAGCTATTGCACATGTCATCTCACAGTACTTGATGGCACTGGCTCTCTTGTTGAAATTGATGAAAAAGGTCGATCTCTTACCACCTAGTATTAAGGATTTGCAAATTTTTCGATTCCTGAAAAACGGAGGGTTGTTGTTAGTAAGAGTGATAGCAATAACATTCTGTGTGACATTTGCTGCTTCATTAGCAGCAAGATTGGGTCCAATTACAATGGCTGCTTTCCAAACATGTCAACAAGTTTGGATGACTTCTTCCCTTCTTTCTGATGGCTTAGCTGTTGCAATTCAGGCAATTCTAGCATGTTCTTTTGCTGAGAAAGACTATGAAAAGGCCAAAGCAGCTGCCGTGAGGGTCATCCAGATGTCATTTGTGATGGGAACAGTGCTGTCTGGTGTTGTTGGAATAGGATTGTACTTTGGAGCAGGAGCCTTCTCTCAAACCCTCAGTGTTCTCCACCTCATTAGAATTGGCCTCCCCGTAATGGTTTCAATCGTAAGCATAGGAATAGAATTTGCGATGTATAAGATGAAAGGCTTCCTTGGCATCTGGATTGCTTTGACTATATATATGGCTCTTCGTATGCTTTCTGGTTTTTGGAGGATGGGAACAGGAACAGGACCTTGGCATTTTCTTAAAGAATAA 1539 0.412 MADNHGSTVHESNNNKWKMPLLVFFTDARKVLKLDSIGRELLGIAIPAALAVATDPIASLIDTAFIGHLGPVELAAAGISITLFNQALGITIFPLVSVTTSFVAEEDTLKKITDIENGLPNKENNNNDDESYLGRQPATANNIEMNYSLPKASVNDNVVKKNSDKNINTNSISNSSTLAASCKNKSKKKKKQIASASTALIFGTILGLLQVSILIFAAKPLLLAMGAKQGSDMLNLAEKYLKLRALGAPAVLLGLAMQAIFRGFKDTKTPLYVIVLGYALNVGLDPVLIFYCKLGLNGAAIAHVISQYLMALALLLKLMKKVDLLPPSIKDLQIFRFLKNGGLLLVRVIAITFCVTFAASLAARLGPITMAAFQTCQQVWMTSSLLSDGLAVAIQAILACSFAEKDYEKAKAAAVRVIQMSFVMGTVLSGVVGIGLYFGAGAFSQTLSVLHLIRIGLPVMVSIVSIGIEFAMYKMKGFLGIWIALTIYMALRMLSGFWRMGTGTGPWHFLKE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0187 512 TIGRFAM matE: MATE efflux family protein 47 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele31g0187 512 Pfam MatE 186 286 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele31g0187 512 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 8 511 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0187 Lele-ChrLele31 1844192 1849026 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1387 29 20624095 20631240 Lele31g0187 31 1844192 1849026 hybridization
Lele30g0167 30 1697127 1702492 Lele31g0187 31 1844192 1849026 hybridization