Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0177 ATGACAGATCCTCAGTCTTGGTTCAACTTCATCCCTCTTCTTCATCCTCCTCATCACTGTTCTTCCTTTACTACTACTACTACTTCTCATCAATCCAACGCCTGTAATAATTCCTTATACCCTCTTTATCATCATGCTCAGTACTCTAATCATAATCACTGCACACCATCATCTTCATCTTCCATTATTCAATACAAAAGCTCTTCAGCTAGTTCCACCTCCACTTTAGGCCATCATCCTCCAAATTCCCCTCCTCTCAAAGAAGCCCTGCCTCTCATAAACAATTTAAGCCTCACAACAGCAAGTGAAAAACCCTCAAAAAGAGCCCTAGAAGAGGAAGATCAAGAGAAGAATGAGAGAATGGAGAAAGAATATGAAGAAGACGACGACGAAGATGATGATGATAGAGGAACTGTGACTGTAGCCCTAGGAATAGGGCTTCCTACTAGTATGAATACTTCTTTTTCTTTTTCTTCTTCTTCTTCTTCTTCAAGCAGGCAGATCTCAAATTCTGTTGAAATGGCTGAAAAAGAGGAACTTGGTTTGGTTTCTGTATACCCTTTGGAGAGATTAAACACGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCGGTTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAGGGGACACAGCCATCGGGAATGCTAAGGCTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAGCATCCACGAGCCAGGCCTCTGAAGGACTTCAGGACTCTGCAGACTCACTACAAGAGAAAGCATGGAATCAAACCCTACATGTGCCGGAAATGCGGCAAGCCGTTCGCCGTCAAAGGCGACTGGCGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTCTTTGTGGCTCTGACTTTAAGCACAAAAGGTCTCTTAAAGATCACGTCAAGGCCTTTGGCCATGGCCATGCAGATTCTAATAATTGCTTGCATAATAATAATGAAGAAGACGAACCAGCTTCTGAGATTGAACAAGATGGTGATAACTCCTCCATGTGA 1128 0.4335 MTDPQSWFNFIPLLHPPHHCSSFTTTTTSHQSNACNNSLYPLYHHAQYSNHNHCTPSSSSSIIQYKSSSASSTSTLGHHPPNSPPLKEALPLINNLSLTTASEKPSKRALEEEDQEKNERMEKEYEEDDDEDDDDRGTVTVALGIGLPTSMNTSFSFSSSSSSSSRQISNSVEMAEKEELGLVSVYPLERLNTGQYWIPTPSQILIGPTRFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPSGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKPFAVKGDWRTHEKNCGKLWFCLCGSDFKHKRSLKDHVKAFGHGHADSNNCLHNNNEEDEPASEIEQDGDNSSM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0177 375 MobiDBLite consensus disorder prediction 53 80 - -
Lele31g0177 375 SUPERFAMILY beta-beta-alpha zinc fingers 205 233 IPR036236 -
Lele31g0177 375 PANTHER ZINC FINGER PROTEIN WIP2 47 371 IPR043584 GO:0003700|GO:0010468
Lele31g0177 375 MobiDBLite consensus disorder prediction 105 122 - -
Lele31g0177 375 Gene3D Classic Zinc Finger 210 233 - -
Lele31g0177 375 Coils Coil 107 131 - -
Lele31g0177 375 MobiDBLite consensus disorder prediction 350 375 - -
Lele31g0177 375 Gene3D Classic Zinc Finger 264 351 - -
Lele31g0177 375 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Lele31g0177 375 SUPERFAMILY beta-beta-alpha zinc fingers 279 315 IPR036236 -
Lele31g0177 375 MobiDBLite consensus disorder prediction 53 137 - -
Lele31g0177 375 FunFam Zinc finger protein WIP2 264 346 - -
Lele31g0177 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Lele31g0177 375 SMART c2h2final6 295 315 IPR013087 -
Lele31g0177 375 SMART c2h2final6 321 344 IPR013087 -
Lele31g0177 375 SMART c2h2final6 211 233 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0177 Lele-ChrLele31 1714161 1717334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0177 139 375 C2H2 Transcription Factor Family AT3G57670 63.985 1.68e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g0177 None None None