Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0166 ATGGCAAATGGCCATGATGGTTCTTCCTCAAACAACGACACGAACAAGTCAGAGAAAGCATGGTGGACAGGAAATACCGAAAAAATTCAGAAAACGGAGAAGGAAGAGACCGAGTTCAAGGTTCCGGAAACAATCACCCCTTGCGTCAACAACTGTGGTGTTACCGGTAATCCGGCCACCAATAATATGTGTCAGAAGTGCTTCGCCGCCACCGCCGCTACCGTTTCCTCAGCCACAACCTCCTCTACCGGGATTTCTGCTCCTTCTAAATATTCCGACGACAAAAGTTCTAAATCCGCACCTTCTCGCTCGCCAAAGAGGTCGCATCCTTCTGATGAGGAGCCAACACAGAATATATCATCAGATCGGACGAAATCGGATGAGACGACGCCGTCTGAAGCCAAGCGTGTGGTGAATCGGTGCTCTGGATGCCGAAGGAAGGTCGGGTTGACCGGATTCCGATGCCGGTGTGGAGAGTTGTTCTGCGCTGAGCACCGGTACTCCGATCGACACGACTGCAGTTACGACTACAAAACCGCTGGACGTGAGGCGATCGCGAGGGAAAATCCGGTGGTAAAAGCGGCGAAGATCGTGAAGGTTTGA 603 0.5191 MANGHDGSSSNNDTNKSEKAWWTGNTEKIQKTEKEETEFKVPETITPCVNNCGVTGNPATNNMCQKCFAATAATVSSATTSSTGISAPSKYSDDKSSKSAPSRSPKRSHPSDEEPTQNISSDRTKSDETTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKIVKV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0166 200 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 28 116 - -
Lele31g0166 200 PANTHER AN1-TYPE ZINC FINGER PROTEIN 46 199 - -
Lele31g0166 200 Pfam A20-like zinc finger 47 68 IPR002653 GO:0003677|GO:0008270
Lele31g0166 200 MobiDBLite consensus disorder prediction 1 27 - -
Lele31g0166 200 MobiDBLite consensus disorder prediction 96 132 - -
Lele31g0166 200 MobiDBLite consensus disorder prediction 78 95 - -
Lele31g0166 200 FunFam Zinc finger AN1-type containing 6 114 196 - -
Lele31g0166 200 ProSiteProfiles Zinc finger AN1-type profile. 135 181 IPR000058 GO:0008270
Lele31g0166 200 MobiDBLite consensus disorder prediction 78 132 - -
Lele31g0166 200 Pfam AN1-like Zinc finger 141 178 IPR000058 GO:0008270
Lele31g0166 200 Gene3D - 128 186 IPR035896 -
Lele31g0166 200 ProSiteProfiles Zinc finger A20-type profile. 42 76 IPR002653 GO:0003677|GO:0008270
Lele31g0166 200 MobiDBLite consensus disorder prediction 1 39 - -
Lele31g0166 200 SMART A20_3 45 69 IPR002653 GO:0003677|GO:0008270
Lele31g0166 200 SUPERFAMILY AN1-like Zinc finger 124 194 IPR035896 -
Lele31g0166 200 SMART AN1_Zf_4 141 178 IPR000058 GO:0008270
Lele31g0166 200 Gene3D - 31 127 - -
Lele31g0166 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0166 Lele-ChrLele31 1591093 1591957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0166 35 200 C2H2 Transcription Factor Family AT3G52800 40.237 1.61e-32 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1416 29 20898130 20898657 Lele31g0166 31 1591093 1591957 hybridization
Lele30g0148 30 1477340 1478026 Lele31g0166 31 1591093 1591957 hybridization