Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0159 ATGAGTGTTATGTATAGTCCAAGTGTTTTAAATTACTCAGGTGGAGAGCTTCGGAGAAACCCAGAAATGGATTCAATTCACCACTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAAGCTCATTTCTGGAAAGCCTTGTTCAGAATGAGGCAGCTTCTAGAAGCATCGATCATCATCAGAATCCATCTTCTTCAAGTTCAGAAATGGAAGCCATGTTGGCAAAGTTGGTTTCTTCATCATCAAACAATGGATGGATCAAGCAGGAAGAAACAGGGGACTCTGTTTCAGAGGGACACAATGGGTATAATAATTCTAATTATGGTTCTCAGATGATTTACCAATCTCAGACTCAGCAAGTTCAACACTTTCCAAATGGGTCTTTAGGTTCTTCTTCTGGGAATGCTTTTGATGGCTCATTCAATTCATCTGAGTCCAAAATTAGGTCTAATAATAATAATCTCTTCAGACAGAAAAGCTCCCCTTCTGGTCTGTTCAACAATTTCTCAGTTGAAAATGGTATAATAATTGTTTTATCTCTAAAAAAATTTGCAGGTTTTGCAACGTGGGGAGTTGCGGGAAGCTTTAAATCATGTGATCATGTCTCAAATGGCCAAGCTTCTACTACATCGGCTAGGGCATCTTCTTGTTCAAGAGAATTGCCTGATATAGCAGAAGATGGGAATGAAACCCTAGAAGAAGCAATTTGTGTTGAAATTGAAAGTAGAAGAAATCTGAGAAATGACAAAAATGGCAACAACATTAATGAATGTTACATTCCCAGCTTCACAAGTGACTTCTGGGATTCTCCTTCATTCAATGACACTAAAGCAGCCAGTGGCAACGACGAACTCATGTTTTCTACTTCAAATGGTTTTGAAACTCAGAATGCTGATTTTGGATATAATCAGAATGTTGGTTTGACTCATCATTTGAGTCTTCCTAGTTCTTCAACAAAGTCAAAGATGAGTGCCATTGAGAAGTTTCTTCAAGTTCAAGGATCTGTTCCTTGTAAGATTCGAGCTAAACGAGGTTTCGCCACTCACCCGCGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATCAGTGAAAGAATAAAGAAGTTGCAAGATCTCTTCCCAAAATCTGAAAAGCAAACAAGCACAGCAGACATGCTGGATTTAGCTGTTGATTATATTAAAGACTTGCAGAAACAAGTTCAGATGCTCACAGATACAAAAGCAAAGTGCAAGTGTTCAAGTAACCAGATGCATAACTCAGTGCCTTGTAGCTAG 1275 0.3882 MSVMYSPSVLNYSGGELRRNPEMDSIHHLNSGLMRYSSAPSSFLESLVQNEAASRSIDHHQNPSSSSSEMEAMLAKLVSSSSNNGWIKQEETGDSVSEGHNGYNNSNYGSQMIYQSQTQQVQHFPNGSLGSSSGNAFDGSFNSSESKIRSNNNNLFRQKSSPSGLFNNFSVENGIIIVLSLKKFAGFATWGVAGSFKSCDHVSNGQASTTSARASSCSRELPDIAEDGNETLEEAICVEIESRRNLRNDKNGNNINECYIPSFTSDFWDSPSFNDTKAASGNDELMFSTSNGFETQNADFGYNQNVGLTHHLSLPSSSTKSKMSAIEKFLQVQGSVPCKIRAKRGFATHPRSIAERERRTRISERIKKLQDLFPKSEKQTSTADMLDLAVDYIKDLQKQVQMLTDTKAKCKCSSNQMHNSVPCS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0159 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983
Lele31g0159 424 SMART finulus 352 402 IPR011598 GO:0046983
Lele31g0159 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 413 IPR036638 GO:0046983
Lele31g0159 424 Pfam Helix-loop-helix DNA-binding domain 352 397 IPR011598 GO:0046983
Lele31g0159 424 Gene3D - 348 420 IPR036638 GO:0046983
Lele31g0159 424 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 416 - -
Lele31g0159 424 FunFam Transcription factor bHLH130 family 347 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0159 Lele-ChrLele31 1539866 1542046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0159 30 414 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.659 9.34e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele31g0159 HLH 1.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1423 29 20942777 20944802 Lele31g0159 31 1539866 1542046 hybridization
Lele30g0142 30 1405184 1412364 Lele31g0159 31 1539866 1542046 hybridization