Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0106 ATGGCAAATCAGCTCTATCTCTATGCCTATAGCCCTACCTACGGAGGAGCTTCACCGCCGCCCGCCGCCGCCGCCACCACTGCCAGTACCCTTTCCTCCAGCCGATATCTTTCTACCGATATGTATTATCCTCAACGTAAAGACTCCATTCTTCGATACTCCCCCTACGCCGCTTCCGATGCCGACATTGGCCCCCCTGGTGTTTCTACCAGACTCTCCAGCGCCTTCTCCGGGCAAACATCTTCCACCGCTTCCCAGTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCTGCTGCAGCAAATGTTGGGTCGTCTGCATTGGAGTCTATTGTTAACATGAAGCGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAACACACTTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGATACGAGAGTACAAGCAATTTGCCTATATACCCACAGAGGCCGGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAGATGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAATACCAGATTGTCCATACTTTGTTAAAACTAACAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAATCATCCCAAGCATTTATTTGAAAATGCTGATATTTCTACCTTACCTGAGAGGCCTTCGGAGCCCCCATGCGCGTTCTACATGAAAACTGGAAAATGCAAGTTTGGTTATACCTGTAAATTTCATCACCCAAAAGACATTCAGATTCAGCTATCTGAAGAACAGAATGGTGCTTTTGAGCAGACCCACTTGACCCCTAATATAAAGGGGGCTTTAGGGGATACACAATTATCTAATATTTTTAGTTCTTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCCGTAAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAATATGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCACCTGCTTCTGCGTTAGGCCAATCTGTTTTGACATCATCAGCTGCTAATCTAAACTTTGGAATTGTAAATCCAGCTGCATCAATTTATAAAGCTATTGACCCCAGATTGTCAAGTGCAACGTCCGAGGTGGGAATGACCGTCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGACCGATCAGCACCATCACAGACAAATTCAGCAGCACAACAAGCTGTTAAACTCACTCTTGCAGGATTACCCAGGAGAGAGGGTGTTGTACTCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGCTGGCAAAGTCACAAGGAGCAAATGATACTGACGAAGGAGAGGAAGTCGAAGCTGATGAAAATCAAGCTGATTCTGTTCGAGAAAAACAATGA 1614 0.4517 MANQLYLYAYSPTYGGASPPPAAAATTASTLSSSRYLSTDMYYPQRKDSILRYSPYAASDADIGPPGVSTRLSSAFSGQTSSTASQLLSQASWPAAIAAAAAANVGSSALESIVNMKRSSDALYHPTVLQTHNTLGQSEAWYSTNSLTKRPRYESTSNLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPDVTSETLPERPGIPDCPYFVKTNRCKFGSRCKFNHPKHLFENADISTLPERPSEPPCAFYMKTGKCKFGYTCKFHHPKDIQIQLSEEQNGAFEQTHLTPNIKGALGDTQLSNIFSSYTAPVLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPASALGQSVLTSSAANLNFGIVNPAASIYKAIDPRLSSATSEVGMTVYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSQTNSAAQQAVKLTLAGLPRREGVVLCPYYLKTGTCKFGATCKFDHPPPGEVMELAKSQGANDTDEGEEVEADENQADSVREKQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0106 537 SUPERFAMILY CCCH zinc finger 423 449 IPR036855 GO:0046872
Lele31g0106 537 SMART c3hfinal6 257 284 IPR000571 GO:0046872
Lele31g0106 537 SMART c3hfinal6 474 501 IPR000571 GO:0046872
Lele31g0106 537 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Lele31g0106 537 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Lele31g0106 537 SMART c3hfinal6 421 448 IPR000571 GO:0046872
Lele31g0106 537 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 421 449 IPR000571 GO:0046872
Lele31g0106 537 PANTHER PROTEIN PHOSPHATASE RELATED 324 382 - -
Lele31g0106 537 FunFam Zinc finger CCCH domain-containing protein 37 323 370 - -
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Lele31g0106 537 Gene3D - 322 369 - -
Lele31g0106 537 Gene3D - 250 295 - -
Lele31g0106 537 SUPERFAMILY CCCH zinc finger 477 501 IPR036855 GO:0046872
Lele31g0106 537 SUPERFAMILY CCCH zinc finger 221 243 IPR036855 GO:0046872
Lele31g0106 537 SUPERFAMILY CCCH zinc finger 260 285 IPR036855 GO:0046872
Lele31g0106 537 SUPERFAMILY CCCH zinc finger 341 365 IPR036855 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 191 IPR000571 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 424 447 IPR000571 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 243 IPR000571 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 476 501 IPR000571 GO:0046872
Lele31g0106 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 363 IPR000571 GO:0046872
Lele31g0106 537 FunFam zinc finger CCCH domain-containing protein 37 419 515 - -
Lele31g0106 537 Gene3D - 164 249 - -
Lele31g0106 537 Gene3D - 419 515 - -
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 474 502 IPR000571 GO:0046872
Lele31g0106 537 MobiDBLite consensus disorder prediction 502 537 - -
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Lele31g0106 537 FunFam Zinc finger CCCH domain-containing protein 37 121 202 - -
Lele31g0106 537 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0106 Lele-ChrLele31 1002330 1009296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0106 207 537 C2H2 Transcription Factor Family AT3G02830 32.071 8.43e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele31g0106 zf-CCCH 3.2e-11 CL0537