Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0072 ATGCCTTTGTTTCCGAACAAGGTGGTCTTTGTCAACCTGATGAAATCAAGCAGTGGCAAGAGGAAGTCTGAAGATGTTGAGATAACTGAGAGAAGAGTGACGAGAAGCATCAGTTCCGGGAAGAGCTCATCATTAACAAACTCCAAAAACACCATTTCCTCATCACCACCACCTTCTACTGAAATTGTTGATCACAGGACCCCTCAACGTCCTATCGGAAAAGACGGTAACTACTATGAGTGTGAGATGTGTTATAAAGTGGGGAGACTTCTGTGTTGTGAAATTTGCCCGCGAGCCTATCATCTCAAGTGCCTCGGGCTTGAGACTGTTCCAGAAGGACATTGGAATTGCCCAAGCTGCTGCGATGATTTCTCGAGGCCAATAAAATACCTTCTGAGGGATTCTACTTCCACAGAAAGCGAACCTGCAGCACCCAAACTCAAATACTCTTCTGCTTCCTCACGATCAAAGAGGGATTAA 480 0.4542 MPLFPNKVVFVNLMKSSSGKRKSEDVEITERRVTRSISSGKSSSLTNSKNTISSSPPPSTEIVDHRTPQRPIGKDGNYYECEMCYKVGRLLCCEICPRAYHLKCLGLETVPEGHWNCPSCCDDFSRPIKYLLRDSTSTESEPAAPKLKYSSASSRSKRD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0072 159 ProSiteProfiles Zinc finger PHD-type profile. 78 123 IPR019787 -
Lele31g0072 159 MobiDBLite consensus disorder prediction 135 159 - -
Lele31g0072 159 SMART PHD_3 80 121 IPR001965 -
Lele31g0072 159 MobiDBLite consensus disorder prediction 35 62 - -
Lele31g0072 159 PANTHER PHD FINGER PROTEIN 12 43 121 IPR042163 GO:0003714|GO:0045892
Lele31g0072 159 ProSitePatterns Zinc finger PHD-type signature. 81 120 IPR019786 -
Lele31g0072 159 MobiDBLite consensus disorder prediction 17 69 - -
Lele31g0072 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
Lele31g0072 159 SUPERFAMILY FYVE/PHD zinc finger 56 121 IPR011011 -
Lele31g0072 159 MobiDBLite consensus disorder prediction 135 151 - -
Lele31g0072 159 MobiDBLite consensus disorder prediction 18 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0072 Lele-ChrLele31 727488 728799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0072 81 121 PHD Transcription Factor Family AT5G58610 53.659 1.60e-11 59.7