Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0050 ATGGGGAAAGGAAGAGCACCTTGCTGTGATAAAACAAAAGTCAAGAGAGGCCCATGGAGTCCTGAAGAAGACCTTAAACTCATTTCCTTCATCCACAAACATGGCCATGACAATTGGAGAGCTCTTCCTAAGCTTGCAGGATTGGTGAGATGTGGGAAAAGCTGCCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAAGACACCATCGTAAGGCTTCACCATGCCTTAGGAAACAAGTGGTCAAAGATTGCATCTCATTTGCCAGGAAGAACAGACAACGAGATCAAAAACATTTGGAACACACATCTCAAGAAAAGATTAAAACCTAAGCCTTCAAAATCAAACAATAATGTTGCTGGTCTCTCTTCATCCATCACTACTACTACTACTACTACTACTTTGTCCTCTGATTCATGTTCTTCCTCTGAGAAAACGGATCAAGATTCAGAGAAACAAGTTCCCAATGAACAACACATCAATGGCGCTGTTACAGAGGAACCGAAAGAATCTCCAGCTTCATTCTCTTCTTCTGATGATCATTCATCAAAACCAGAAGAAGAAGATGAACATATTTTAGAGTCTTTGCTTAAAGACGACGACGATCCTCTGCTCCAAATTCCAATGGACACATTGGATCTTGACATCTGGAACATTCTGGAGAATCCAGAATCCTTCCAATCAAATGATTTTCAGTTCCCAACTGTTTCTTCTGAAGATGATGCCGACAAGAACAAGTGGTTTCGTGAATTAGAGAATGAACTTGGATTGGGAACATCATCAGAGGGGTTGAACAACCTAGCCAGGAATCTTGATGATCAAGCAGGCATGGATTTTCTTGAATCATCATGGTCCTCTTGGCCTGAAATTGAAATTTACAATCTTTAA 918 0.4096 MGKGRAPCCDKTKVKRGPWSPEEDLKLISFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIVRLHHALGNKWSKIASHLPGRTDNEIKNIWNTHLKKRLKPKPSKSNNNVAGLSSSITTTTTTTTLSSDSCSSSEKTDQDSEKQVPNEQHINGAVTEEPKESPASFSSSDDHSSKPEEEDEHILESLLKDDDDPLLQIPMDTLDLDIWNILENPESFQSNDFQFPTVSSEDDADKNKWFRELENELGLGTSSEGLNNLARNLDDQAGMDFLESSWSSWPEIEIYNL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0050 305 MobiDBLite consensus disorder prediction 113 201 - -
Lele31g0050 305 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele31g0050 305 MobiDBLite consensus disorder prediction 123 153 - -
Lele31g0050 305 Gene3D - 15 68 - -
Lele31g0050 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lele31g0050 305 FunFam Transcription factor RAX3 9 69 - -
Lele31g0050 305 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele31g0050 305 CDD SANT 18 63 IPR001005 -
Lele31g0050 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele31g0050 305 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele31g0050 305 CDD SANT 71 114 IPR001005 -
Lele31g0050 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 228 - -
Lele31g0050 305 SMART sant 15 65 IPR001005 -
Lele31g0050 305 SMART sant 68 116 IPR001005 -
Lele31g0050 305 Gene3D - 70 167 - -
Lele31g0050 305 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lele31g0050 305 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0050 Lele-ChrLele31 550731 553673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0050 1 120 MYB Transcription Factor Family AT1G56160 85.000 1.41e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele31g0050 Myb_DNA-binding 2.6e-15 CL0123