Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0049 ATGCAAATGGAGGCACGAATTCCTAAACCCACCAAGGCTTTGCCCCTCAACGAATCTACGGGTACTCATCCCCTTCGCAAATTTCTTCCTCGTTCTCTCACTCTTCTCTGCACTGTCTCACGCAGTTCTTCCTCTTCGCAAACAAGTACCAGCCTCAACAAGATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTAGCTGATTATAACATCCAAAAGGAATCAACGCTTCACTTGGTTTTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAGGAGGGAATTCCTCCAGTGCAGCAGAGGCTCATATATGCCGGTAAGCAGCTTGCAGATGACAAAACAGCCAAAGAGTACAACATTGAGGGAGGTTCTGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTATCCATTAA 627 0.4609 MQMEARIPKPTKALPLNESTGTHPLRKFLPRSLTLLCTVSRSSSSSQTSTSLNKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0049 208 ProSitePatterns Ubiquitin domain signature. 81 106 IPR019954 -
Lele31g0049 208 PRINTS Ubiquitin signature 86 106 IPR019956 -
Lele31g0049 208 PRINTS Ubiquitin signature 107 128 IPR019956 -
Lele31g0049 208 PRINTS Ubiquitin signature 65 85 IPR019956 -
Lele31g0049 208 CDD Ubl_ubiquitin 55 130 - -
Lele31g0049 208 MobiDBLite consensus disorder prediction 1 23 - -
Lele31g0049 208 ProSiteProfiles Ubiquitin domain profile. 55 130 IPR000626 GO:0005515
Lele31g0049 208 FunFam NEDD8 protein 131 208 - -
Lele31g0049 208 ProSitePatterns Ubiquitin domain signature. 157 182 IPR019954 -
Lele31g0049 208 SUPERFAMILY Ubiquitin-like 40 130 IPR029071 -
Lele31g0049 208 FunFam Polyubiquitin 3 55 130 - -
Lele31g0049 208 SUPERFAMILY Ubiquitin-like 132 206 IPR029071 -
Lele31g0049 208 SMART ubq_7 131 202 IPR000626 GO:0005515
Lele31g0049 208 SMART ubq_7 55 126 IPR000626 GO:0005515
Lele31g0049 208 ProSiteProfiles Ubiquitin domain profile. 131 206 IPR000626 GO:0005515
Lele31g0049 208 Pfam Ubiquitin family 57 128 IPR000626 GO:0005515
Lele31g0049 208 Pfam Ubiquitin family 133 204 IPR000626 GO:0005515
Lele31g0049 208 Gene3D - 132 208 - -
Lele31g0049 208 Gene3D - 47 131 - -
Lele31g0049 208 PANTHER UBIQUITIN 55 132 - -
Lele31g0049 208 CDD Ubl_NEDD8 133 206 IPR038738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0049 Lele-ChrLele31 535070 537151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0049 133 207 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.667 2.32e-27 99.4