Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0004 ATGGTTATGTCGACGAGCTTCTTGTGCAGTAGAATCCCAGCAAAATTGACTTCAAAACGGAGTTTGCATTTCCGTTGTAATGCCTCTAATGGGCCCTTTTCTTCACTTCGGTCCCTTAGTCTATTTACTCGTAATAATGCCTACACCTTGTGCAGCTCACCACCTTCATTCGGCTTCCTACAAGTCATTCGAAACGGCCCCAACGGCAGCAACAATGAAACTAAGCTTTCCAATAGCACCAAAAGCAGGAGACGACGTCGATTTAAAGCAAGTACAAAGCTGACTAGTGCTAACGAAACTAAGAAGAATGGGTCTTCCCAATATCCATCTCAGTCATCCTTGCCAGTGCTCCCGGCAGTGGACTTGAACACCCAGATAGAAGAAAAGGAGGAGGCCCAAGGCATTGAGAGGGGGAGAGAAAGTAGCGGTGAGTCACCGCTCAACGTGAGTGGTATCTACCAGAATGGAGACCCACTTGGGCGGAAGGATCTGGGGAAGAGCGTCGTGCGATGGATTCGTCATAGTATGAGGGCCATGGCTTCCGATTTTGCTTCTGCGGAGGCGCAGGGGGAGTTCTCGGAGCTGAGGCAGCGCATGGGACCAGGTCTCACCTTTGTAATTCAGGCTCAACCTTATTTGAATGCCGTTCCCATGCCTCTTGGCGTTGAAGTTATCTGCTTGAAGGCTTGCACCCATTATCCTACTCTGTTTGATCACTTTCAAAGGGAGTTGCGGGACGTTCTCCAAGACCTCCAGCGTAAATCATTGGTCCAAAACTGGTGTGAAACTGAATCATGGAAACTACTGAAAGAGCTCGCCAAATCAGCTCAGCATAGGGCAATTGCAAGAAAGGTAGCGCAGCCGAAGTCTGTCCAAGGCGTTTTAGGAATGGACTTAGAGAAGGTCAAGGCAATACAGCACAGAATTGAGGAATTCACCAAGCGCATGTCAGAATTACTCCGCATAGAAAGAGATGCCGAGTTGGAGTTTACACAAGAAGAATTGGATGCTGTTCCTAGACCAGATGATACTTCTGACTCCTCGAAGCCGATTGAGTTCTTGGTTAGCCATGGTCAGGCTCAACAAGAACTCTGTGACACTATTTGTAATTTAAACGCCATCAGTACATCTACAGGATTGGGAGGAATGCATCTGGTGTTATTCAAGGTGGAAGGTAACCACCGGTTACCACCTACTACACTTTCGCCCGGAGACATGGTTTGTGTGAGAACATGTGATAACAGAGGTGCAGTCACAACCTCTTGTCTGCAAGGCTTTGTTAACAATCTTGGGGATGACGGCTGTAGTATCAGTGTTGCTTTAGAGTCACGCCATGGTGATCCTACTTTCTCTAAACTCTTTGGGAAGAGTGTGCGTATTGACCGAATCCAAGGACTGGCTGATACTCTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCTGAAGAATGGTCTACGAAAGAAGAATCCTTCTATTGCTGTTGTGGCGACACTGTTTGGAGATGGGGAAGATTTTGCTTGGCTTGAGAAAAATCATATAGCTGACTGGGATGAAGAAAACATAAACGGACTGTTAGGAAGTGAAAACTTTGATAATTCCCAGCAAAAAGCAATAGCACTAGGTTTGAATAAAAATAGGCCTGTGTTGGTTATCCAAGGGCCTCCTGGTACAGGGAAGACAGGTTTGCTCAAGCAACTTATAGCACATGCTGTTCAACGAGGTGATAGGGTTCTTGTAACAGCACCTACTAATGCAGCTGTTGATAACATGGTGGAAAAGCTTTCAAATATTGGATTGAATATTGTGCGGGTTGGCAATCCTGCTCGCATATCAAAAACCGTGGGTTCAAAGTCTCTAGGAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGCTGAGTATGAAAGGAAGAAGTCAGATCTAAGGAGAGATCTCAGATATTGCTTAAAAGATGATTCATTAGCGGCTGGCATACGCCAACTTCTGAAACAGCTGGGAAGGTCACTGAAGAGAAAGGAAAAGGAGACGATGAATGAGGTGCTATCTAGTGCTCAGGTTGTGCTTGCCACAAATACTGGAGCAGCTGATCCATTGATTCGAAGGCTAGATGCTTTTGACTTGGTTGTTATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCTTTGGAAGGAGGTCTTGGAATATCATTACTGGAAAGGGCTACAACTTTGCATGAAGGGGTTCTCACCACAAGGTTAACAATACAATACCGTATGAATGATGCAATTGCTAGCTGGGCTTCAAAGGAGATGTATGGTGGATTATTGAAGTCCTCTAAGATTGTCTTTTCTCATCTTCTTGTTGACTCTCCTTTTGTCAAGCCTACATGGATAACACAATGTCCTCTGTTGTTGCTCGATACAAGAATGCCATATGGAAGTCTGGCAATTGGTTGCGAAGAGCATCTAGACCCAGCTGGAACAGGTTCATTTTATAATGAAGGAGAAGCTGATATTGTTGTGCAGCACGTCTTTTCCTTAATTTGTTCTGGTGTCAACCCGGCAGCTATTATGGTACAATCTCCATATGTTGCTCAAGTACAACTTTTGAGGGACATGCTGGATGAGTTGCCAGAGGCTATTGGTACTGAGGTTGCAACAATTGATAGCTTTCAAGGACGGGAAGCTGATGCAGTAATTATATCCATGGTACGTTCAAACGCTTTAGGTGCTGTTGGATTCCTGGGTGATAGCAGAAGAATCAATGTTGCCATCACGAGGGCCCGCAAACATGTTGCAGTGGTATGTGACAGCTCCACAATTTGCCATAATACCTTCTTAGCAAGGCTTCTACGTCACATCCGGCATTTCGGGAGGGTGAAACATGCAGAACCCGGTCATTCTGGGGGTTCTGGGCTGGGCATGAATCCAATGTTACCCTCCATTAATTAG 3021 0.4548 MVMSTSFLCSRIPAKLTSKRSLHFRCNASNGPFSSLRSLSLFTRNNAYTLCSSPPSFGFLQVIRNGPNGSNNETKLSNSTKSRRRRRFKASTKLTSANETKKNGSSQYPSQSSLPVLPAVDLNTQIEEKEEAQGIERGRESSGESPLNVSGIYQNGDPLGRKDLGKSVVRWIRHSMRAMASDFASAEAQGEFSELRQRMGPGLTFVIQAQPYLNAVPMPLGVEVICLKACTHYPTLFDHFQRELRDVLQDLQRKSLVQNWCETESWKLLKELAKSAQHRAIARKVAQPKSVQGVLGMDLEKVKAIQHRIEEFTKRMSELLRIERDAELEFTQEELDAVPRPDDTSDSSKPIEFLVSHGQAQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDNRGAVTTSCLQGFVNNLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLLKNGLRKKNPSIAVVATLFGDGEDFAWLEKNHIADWDEENINGLLGSENFDNSQQKAIALGLNKNRPVLVIQGPPGTGKTGLLKQLIAHAVQRGDRVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFRAEYERKKSDLRRDLRYCLKDDSLAAGIRQLLKQLGRSLKRKEKETMNEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGVLTTRLTIQYRMNDAIASWASKEMYGGLLKSSKIVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLAIGCEEHLDPAGTGSFYNEGEADIVVQHVFSLICSGVNPAAIMVQSPYVAQVQLLRDMLDELPEAIGTEVATIDSFQGREADAVIISMVRSNALGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGHSGGSGLGMNPMLPSIN 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0004 1006 Gene3D - 335 466 - -
Lele31g0004 1006 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 184 990 - -
Lele31g0004 1006 Coils Coil 657 677 - -
Lele31g0004 1006 Gene3D - 315 764 IPR027417 -
Lele31g0004 1006 MobiDBLite consensus disorder prediction 93 114 - -
Lele31g0004 1006 FunFam DNA-binding protein SMUBP-2 isoform X2 335 466 - -
Lele31g0004 1006 Coils Coil 309 329 - -
Lele31g0004 1006 Pfam AAA domain 758 961 IPR041679 -
Lele31g0004 1006 SMART AAA_5 547 762 IPR003593 -
Lele31g0004 1006 CDD SF1_C_Upf1 782 978 IPR041679 -
Lele31g0004 1006 Pfam AAA domain 532 748 IPR041677 GO:0004386
Lele31g0004 1006 CDD DEXXQc_SMUBP2 531 781 - -
Lele31g0004 1006 Gene3D - 780 988 IPR027417 -
Lele31g0004 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 969 IPR027417 -
Lele31g0004 1006 MobiDBLite consensus disorder prediction 63 77 - -
Lele31g0004 1006 SMART ultradead3 528 781 IPR014001 -
Lele31g0004 1006 MobiDBLite consensus disorder prediction 63 114 - -
Lele31g0004 1006 MobiDBLite consensus disorder prediction 130 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0004 Lele-ChrLele31 64601 82196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0004 523 721 Core DNA Replication Machinery Family AT1G08840 26.368 6.78e-08 55.1