Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1375 ATGCAATTCTTGATCAGTGATTTCCATTGTGAGATTATGAACCCCTATGCGATGGATTTGGCCCTGGATTTCCTGGTTCCGTCTTTGTGGGAGATCAAAGTCACAGTTGCCACCTCCATGTTTGTGATAATCGCCTATTGGTTTTTCACGTACAGAACTGGAGACTTTGATGTTGATCGAGTACTTGACAATTCCGGGGATGCTTCTGACGACAAAGACAAGATGTCCCAGTTTAAAGGAGATTCTCAGATCAATTCGGCGTATTTGATCAAGTTGGAACTTTGGGCTGCTAAGAATCTTATTGGTGCAAATTTAAATGGCACGTCAGATCCTTATGCTATCATCACATGTGGCAATGAGAAGAGATTCAGTTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAAGAATTCAATTTCTCTGCTGATGAACTTCCTGTCCAGATTAACGTTACGATATATGATTGGGATATTATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCCAATTGAAAGTGAAGGTCAAACTGGTGCGGTATGGTATACATTAGATAGCCCATCAGGGCAGGTTTGCCTTCACATAAAAACAAGAAAACTGTCCACAAATTGTTCCAGGATGAATGGGTATGGCGTACCCAACCCTCGCAGAAGGATGCCTACAGAAAAGCAAGGGCCTACTGTTGTTCATCAAAAGCCAGGGCCTCTTCAGACAATATTTAATCTTCTTCCTGATGAGGTTGTTGAACATAGTTACTCTTGTGCACTTGAGAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAGCATGGCGTATTTGCTTCCATTCTAATGTGTTCTCAAAGCAAATGAAGGTGGTAATTCCTTTTGAGGATATAGATGAGATTCGAAGGAGTCAGCATGCATTTATTAATCCTTCTATAACAATTATTCTCCGTATGGGTGCGGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGAGTAAGATACAAGTTTGCATCATTTTGGAATAGGAATCATACATTTAGAAATTTACAACGTGCAGCAAAGATTTTCTGTGAAATGCTGGAAGCTGAGAAGAAGGAAAACGCAGAGTCAGAATTGCGTGCACATAGCAGCTCTGTTAGGGGAAATAAGATACCGGATAAGGTTCCTGAAGAAAATATGGGAAAAACTGGAAAGTCTCAACCTTTTGTCAAAGAAGAGGCTTTAGTTGGTATATATAATGATGTTTTCCCTTGCAAGGCTGAGCAGTTCTTTAACTTGTTATTTAACGATGATTCAAAATTTACGAGCGAGTATCGTTCAGTACGAAAGGATACTAATCTGGTGATGGGACAGTGGCATACAGCAGATGAATATGATGGTCAAGTCAGAGAGATAACCTTCAGATCTCTTTGTAACAGTCCTATGTGCCCTCCAGACACTGCCATGACAGAGTGGCAACATGTTGTTCTATCGCCAGACAAGAAAAAATTGGTGTTTGAAACCGTCCAACAGGCACATGATGTACCATTTGGGTCCTATTTTGAGGTGCATTGTAAATGGAGTTTGGAGACAATTAATGAAAGTTCAAGTGCATTGGACATAAAAGTGGGTGCGCACTTTAAGAAATGGTGTGTGATGCAATCTAAAATCAAGGCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGAAGTTGCCCGATCTTATGTAGAGAACAGCGCTTCTGGCGGTGAGATTGACACGGCGGTTTCACCCCCTCCAACTTCTGACAGCGCGTAA 1791 0.416 MQFLISDFHCEIMNPYAMDLALDFLVPSLWEIKVTVATSMFVIIAYWFFTYRTGDFDVDRVLDNSGDASDDKDKMSQFKGDSQINSAYLIKLELWAAKNLIGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSADELPVQINVTIYDWDIIWKSAVLGSVTVPIESEGQTGAVWYTLDSPSGQVCLHIKTRKLSTNCSRMNGYGVPNPRRRMPTEKQGPTVVHQKPGPLQTIFNLLPDEVVEHSYSCALERSFLYHGRMYVSAWRICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPSITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLQRAAKIFCEMLEAEKKENAESELRAHSSSVRGNKIPDKVPEENMGKTGKSQPFVKEEALVGIYNDVFPCKAEQFFNLLFNDDSKFTSEYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWSLETINESSSALDIKVGAHFKKWCVMQSKIKAGAVNEYKKEVDVMLEVARSYVENSASGGEIDTAVSPPPTSDSA 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1375 596 MobiDBLite consensus disorder prediction 578 596 - -
Lele30g1375 596 SMART gram2001c 236 302 IPR004182 -
Lele30g1375 596 MobiDBLite consensus disorder prediction 213 232 - -
Lele30g1375 596 Gene3D - 237 355 IPR011993 -
Lele30g1375 596 Pfam VAD1 Analog of StAR-related lipid transfer domain 412 557 IPR031968 -
Lele30g1375 596 Pfam C2 domain 92 186 IPR000008 -
Lele30g1375 596 MobiDBLite consensus disorder prediction 369 399 - -
Lele30g1375 596 Pfam GRAM domain 239 311 IPR004182 -
Lele30g1375 596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 88 200 IPR035892 -
Lele30g1375 596 Gene3D C2 domain 72 203 IPR035892 -
Lele30g1375 596 PRINTS C2 domain signature 105 117 IPR000008 -
Lele30g1375 596 PRINTS C2 domain signature 129 142 IPR000008 -
Lele30g1375 596 PRINTS C2 domain signature 150 158 IPR000008 -
Lele30g1375 596 MobiDBLite consensus disorder prediction 577 596 - -
Lele30g1375 596 FunFam BAG-associated GRAM protein 1 isoform X2 237 356 - -
Lele30g1375 596 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 18 587 IPR044655 -
Lele30g1375 596 ProSiteProfiles VASt domain profile. 408 578 IPR031968 -
Lele30g1375 596 ProSiteProfiles C2 domain profile. 69 186 IPR000008 -
Lele30g1375 596 CDD C2 90 186 - -
Lele30g1375 596 SMART C2_3c 89 195 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1375 Lele-ChrLele30 15899665 15909124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1375 58 174 C2H2 Transcription Factor Family AT4G21160 24.786 4.58e-06 47.4