Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1369 ATGTTTCGGAAATTTGGGATCAGTGTTTCTGCTCAATGGTTACCAGGGGCGTTGAGTGATATCTCCTCCATAAGCTGTAAATGGGCCGGACTAGCCTCTTTTGTGCTCAGAAATCCAACTCGAAAAGCCAAGTCAGCAGCTTTTATTTCTGATCAAGTAGATTTTGTTATCCGCACTCCAAGAATGAGCATGGCTTGCTGTCCTTCATCCCTGCTTCTGTCACTCGGTTCTGCTTCCGGTAGAACTCTGTCCTACGCTCCCCAAGTCATTTCTGATGACAAAGTTCAATGTCTGGCTGTGCATTGCTCAAGCTTCGATCTTCAAACCAAGTCCACGAGGGCAAGAGAATGCGAAGCTATGCTTAACAACATTACGCGTAGAGACATTCTCGGGTTTGCTTTCGGAGGCCCAACCCTCTCCATGATTTCATTTCCTGCCAAAGGAGCTGGTTTACCCCCAGAAGAAAAGCCAAGGCTCTGTGATGATACCTGTGGGAAAGAGCTTGAAAATGTGCCTATGATAACTACTGAGTCAGGTTTGCAATACAAGGATATTAAAGTTGGAAAGGGCTCTACACCACCAGTTGGATTTCAGGTGGCTGCTAACTATGTTGCGATGGTTCCATCTGGACAAATATTTGATAGTTCATTGGAGAAAGGTCAGCCCTACATTTTTCGCGTTGGCTCTGGTCAGGTGATAAAGGGACTTGATGAAGGAATTTTGGGCATGAAAATAGGAGGGAAACGCCGGTTGTACATACCTGGATCATTGGCATTCCCCAAAGGTCTTACATCTGCTCCAGGAAGACCAAGGGTGGCTCCCAACAGTCCAGTCATATTTGATGTTAGTCTGGAATACATCCCAGGGCTTGAACTGGATGAGGAATGA 888 0.4617 MFRKFGISVSAQWLPGALSDISSISCKWAGLASFVLRNPTRKAKSAAFISDQVDFVIRTPRMSMACCPSSLLLSLGSASGRTLSYAPQVISDDKVQCLAVHCSSFDLQTKSTRARECEAMLNNITRRDILGFAFGGPTLSMISFPAKGAGLPPEEKPRLCDDTCGKELENVPMITTESGLQYKDIKVGKGSTPPVGFQVAANYVAMVPSGQIFDSSLEKGQPYIFRVGSGQVIKGLDEGILGMKIGGKRRLYIPGSLAFPKGLTSAPGRPRVAPNSPVIFDVSLEYIPGLELDEE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1369 295 SUPERFAMILY FKBP-like 164 284 - -
Lele30g1369 295 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 195 284 IPR001179 GO:0003755
Lele30g1369 295 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 196 288 IPR001179 GO:0003755
Lele30g1369 295 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 146 288 - -
Lele30g1369 295 Gene3D - 169 286 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1369 Lele-ChrLele30 15843826 15847853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1369 173 284 Calmodulin-binding Proteins AT5G48570 40.708 3.59e-14 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1369 30 15843826 15847853 Lele31g1517 31 20380690 20383841 hybridization
Lele30g1369 30 15843826 15847853 Lele32g0025 32 175670 181237 hybridization