Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1360 ATGGAATACCCTTCTTCTCATAAGGGAAAAGACAGTGGATACTGGAATTCAACTCGAGCCCAGTTGGAGGGACCAGCATCATTAGATGGTAGCACAAAAAATTCAATTTCAGAGGACATGCTTAGCACCTTCTCTGAGCTCATAAATTTTGTTACTTATGCTGGTTGGTGCAATGGCTCCTCAACCACTGATCAGGTTTTAGCTAATGGGCTTTCATCATATGCCTCGGTACCATATGCATCACTTGATGGATTCAACTTAGTGGAGGAGAGCAGTGGGTCATTCTTGGCAAGTGATGTCAATAAGAATTACAATGTGATAAGAAGTTTCCCCAACTCTGGAGAGAAAGTTGCATTTCAGCAAATGGAGGCCCAGCTTGAGCTCTCTGATGATGGAAATGATGCTGGGAACTTAAACTATAAGCATCGTCTTAATGAATCTTTTGAAGAACTTAATAACTTAGCGATGGGCAATTATATAGTTTCTAGGCCTCCTGGCTCGTCACTGGATGAGAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCTGCTGGTGGAGGCATCTTGGCACAAGTTTGGGTACCAAGAAAGCATGGAAATCAATTCATCTTAACCACTAGTGAGCAACCTTATTTGCTGGACCAAATGCTTGCAGGTTATCGTGAAGTGTCAAGGACATTTACATTCTCAGCAGAAGTAAGGCCAGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTACACTAAGGCTGAATATTTGAGGATTGAGCATGCGATTAATCATGAGGTTCGTGGATCAATTGCACTTCCAGTGTTTGATCTTTACTCTGAAATGCCATGCTGTGCTGTGCTGGAACTTGTCACTACAAAGGAAAAGAATGATTTTGATAGAGAACTGGAAATTGTTTGCCAAGCACTCCAGGTTGTGAATTTAAGGACTACTGTGACGCCCCGACTTCCTCCCCAGAGTCTCTCAAATAACAAAAGAGCAGGTTTAATGGAGATAATTGATGTGTTACGGGCTGTGTGTCATGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAATTGGCAATGAAACTATGAGAGTACTAAGTAAGGAGGGTCATTCAAGTTCTAGTGATAAATGTTTATTATGCATTGAAGAATCCGCTTGCTATGTTAATGATAGAATGATGGAAGGATTTGTCCATGCATGTGTTGAGCATCATCTTGAGGAAGGGCAAGGTACAGCTGGCAAAGCTATCCAGTCAAATCAGCCTTTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAGTATCCACTCGTTCAACATGCACGCAAATACAATTTGAATGCTGCGGTTTCTATCAGGCTAAGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCGTGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACAGTTACTGATGCTGAATTATCAGGGTCACTGGTAAATCTTCAAAATGAAAAAGTACGAGATTTTTTGCCTATATCTAGGAGAAATTCTCAAATAGAATTGATGGATGGTGACAAGGACTCAGTCAGTAAGATTTCATTGAAGGCTTGCAGCTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAACTGAATGGGTCAAAAAGGCAGGTTGAGAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTAAAGGATGCTGCAAAGAGCATTGGCGTATGTCCTACAACTCTGAAACGGATATGCAGGCAACATGGCATTTCGAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCATACTGTGCTCGATTCTGTTCAGGGAGTGGAAGGAGGGCTAAAGTTTGACCCATCTACTGGGGGTTTTGTGGCAGGAGGTTCAATCATTAAAGAATTTGATGCACACGGTCGTCTTTTGTTCACTGAGAATAGTATGCCCGTACAAGATCCTGAGGGTGTTACAAAATGTACAGTCTCAGTGCCTACTGTACCTTGTAGTGAAGGAGAGAATTCAGCAATTAAGTTCGAAGATAATGATGTTTATTTGGCTGATAACCAGCTTGTGTGCTCACAGGGTGTGATCATCCCAAATTCTGGCGAGGGAGAATTGAAGAACGCCAAAGCTTCTTTTGTTGATTGTAATCGAGGTTCAAAATCAATGTCCTTGGATGATGGATCATGCCGGATGGTCAAGGCTCAGGGTTGTCCTGAGCAAGCATGTCTTGGTTCAGTTGCTACAAAAGATGGAAGCGCATGTAGTCTGAACAAGGATGGTCATGGAGCGAAAAATTCTTGTCCTGATATTGTCACTTGGAGTTCAAACTCTCTGGTTGCTGTTGAGATGGAAAATATTATGGATGGGGACAATGGGATTGTTGAACACAGCCAACCAACTTCTTCAAACGTGACAGACTCATCCAATGGCTCAGGTTCAATGATCCATGGCAGTTCTTCTGGTGCTCAAAGCTTTGAGGATCAGAAGCATTCCAAAGTCAAATCAACGCTTGTTGACAGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGATGATACAATACGTTTCAAGTTTGACCCATCTGCAGGTTGTTTCCAATTATATGAAGAAGTAGCAACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGATAAATGACTCAGATTTGCAAGAGTGCGTAGAAATATGGGAAGATATGGGCACACGTACTGTGAAGTTTCTTGTTCGTGATATGCCTTGCTTAGTAGGCAGCTCTGGTAGTAGCAGTTGCTTCCTGGGAGGCTCCTAG 2991 0.4179 MEYPSSHKGKDSGYWNSTRAQLEGPASLDGSTKNSISEDMLSTFSELINFVTYAGWCNGSSTTDQVLANGLSSYASVPYASLDGFNLVEESSGSFLASDVNKNYNVIRSFPNSGEKVAFQQMEAQLELSDDGNDAGNLNYKHRLNESFEELNNLAMGNYIVSRPPGSSLDERMLRALSLFKESAGGGILAQVWVPRKHGNQFILTTSEQPYLLDQMLAGYREVSRTFTFSAEVRPGSVLGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHEVRGSIALPVFDLYSEMPCCAVLELVTTKEKNDFDRELEIVCQALQVVNLRTTVTPRLPPQSLSNNKRAGLMEIIDVLRAVCHAHSLPLALTWIPCCYLKGIGNETMRVLSKEGHSSSSDKCLLCIEESACYVNDRMMEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKAYDVGEYPLVQHARKYNLNAAVSIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSCTMQRICKSLRTVTDAELSGSLVNLQNEKVRDFLPISRRNSQIELMDGDKDSVSKISLKACSLRNNGIEAAYNQELNGSKRQVEKKRSTGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIHTVLDSVQGVEGGLKFDPSTGGFVAGGSIIKEFDAHGRLLFTENSMPVQDPEGVTKCTVSVPTVPCSEGENSAIKFEDNDVYLADNQLVCSQGVIIPNSGEGELKNAKASFVDCNRGSKSMSLDDGSCRMVKAQGCPEQACLGSVATKDGSACSLNKDGHGAKNSCPDIVTWSSNSLVAVEMENIMDGDNGIVEHSQPTSSNVTDSSNGSGSMIHGSSSGAQSFEDQKHSKVKSTLVDSGSKIIVKATYKDDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLINDSDLQECVEIWEDMGTRTVKFLVRDMPCLVGSSGSSSCFLGGS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1360 996 ProSiteProfiles PB1 domain profile. 897 979 IPR000270 GO:0005515
Lele30g1360 996 MobiDBLite consensus disorder prediction 848 880 - -
Lele30g1360 996 MobiDBLite consensus disorder prediction 845 880 - -
Lele30g1360 996 PANTHER PROTEIN NLP8 113 990 IPR045012 GO:0003700
Lele30g1360 996 SUPERFAMILY CAD & PB1 domains 892 981 - -
Lele30g1360 996 Pfam PB1 domain 900 978 IPR000270 GO:0005515
Lele30g1360 996 ProSiteProfiles RWP-RK domain profile. 582 668 IPR003035 -
Lele30g1360 996 Pfam RWP-RK domain 600 648 IPR003035 -
Lele30g1360 996 Gene3D - 894 978 - -
Lele30g1360 996 CDD PB1_NLP 898 978 IPR034891 -
Lele30g1360 996 SMART PB1_new 897 979 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1360 Lele-ChrLele30 15793435 15798100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1360 1 994 NLP Transcription Factor Family AT2G43500 47.337 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele30g1360 PB1 1.1e-15 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1360 30 15793435 15798100 Lele31g1511 31 20345520 20350275 hybridization
Lele30g1360 30 15793435 15798100 Lele32g0031 32 211955 216625 hybridization