Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1346 ATGAAAATCCAGTGCGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCCGATGAGGCTGCTTTATGTGCTAAATGCGACATTGAAGTTCATGCTGCCAACAAGCTAGCCAGCAAGCACCAGAGGCTTCTCCTTCAGTGCCTCTCTACCAAGCTTCCCACATGCGACATCTGCCAAGACAAGCCAGCTTTTATATTTTGTGTTGAAGACAGAGCGCTGTTCTGTGAAGCTTGTGATGAACCAATTCATTCAGCTGGCAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCAACTGGTATCCGGGTGGCTTTGAGTTCTCACTGCTCCAAGGACAACGAAGAACGTCGCTTGGAGCCACCTAATCGGAGTGCTCAACAAGCTTCTGCAAAATCCCCCCCTCAGCCTCAGCAAGTCCCTACCTTCACATCCTCCTGGGCTGTGGATGACTTGTTGGAATTCACTGACTTCGAATCACCTGATAAAAAAGAATCGCTGGAGTTTGGAGAGCTGGAATGGTTATCGGAGGTGGGTCTTTTCGGAGAACAATTTCCTGGGGAGGCATTGGCTGCAGCTGAAGTCCCACAGCTTCCAGTAACACAAACCAGCAACGTTGCCTCATACAGACCCTTTAAGTCCATTTCTCTCAAAAAGCCTCGGATTGAATTTGAAGACGATGATGAGCACTTCACCGTGCCTGATCTTGGTTGA 714 0.4944 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSTKLPTCDICQDKPAFIFCVEDRALFCEACDEPIHSAGSLSANHQRFLATGIRVALSSHCSKDNEERRLEPPNRSAQQASAKSPPQPQQVPTFTSSWAVDDLLEFTDFESPDKKESLEFGELEWLSEVGLFGEQFPGEALAAAEVPQLPVTQTSNVASYRPFKSISLKKPRIEFEDDDEHFTVPDLG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1346 237 Gene3D Classic Zinc Finger 1 94 - -
Lele30g1346 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele30g1346 237 CDD Bbox1_BBX-like 57 98 - -
Lele30g1346 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lele30g1346 237 CDD Bbox1_BBX-like 5 47 - -
Lele30g1346 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele30g1346 237 MobiDBLite consensus disorder prediction 113 141 - -
Lele30g1346 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele30g1346 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele30g1346 237 MobiDBLite consensus disorder prediction 123 141 - -
Lele30g1346 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1346 Lele-ChrLele30 15711898 15713410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1346 1 163 Orphan Transcription Factor Family AT1G06040 69.048 5.50e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele30g1346 zf-B_box 6.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0477 11 4587647 4589161 Lele30g1346 30 15711898 15713410 CCT
Lele30g1346 30 15711898 15713410 Lele31g1500 31 20267994 20269482 hybridization
Lele30g1346 30 15711898 15713410 Lele32g0046 32 291629 293162 hybridization