Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1340 ATGGACCGGGTGGTCGGGTATGGGCCACATCTGGCTGATGTGAACAGAATGATCTGGCTAGGGAACTCGTGTTCATGCTATGAGTTGTTTCCGAGAAAATTTAGGAGGGAGAAGGATGGAATTCCTTCATTTGGGACCTCCGAGTTTGAGACCCTTGTTGCTGCAGTGGAGTTTGCAATTGATGGCTCTATTCATGGTGAGACAGTAGGAAATGCTATTTTAAGGGATGTTGGCTGTATAGAGGATGAAAGCAAAACAGGCGGTAGTTCAGTTGAACCAACTTATAAACTAGATCAAGGTGATACATTGGCTGATGATTCTTCTGGAGGGGATACAATTCCATCAGGAGTTCCTGCAGTATCAGTTGTTTCAGCTGAGGAGCCCTATGTGGGTCAAGAGTTTGAGTCAGAAGCAGCAGCACATGCTTTTTATAATGCATATGCCACAAATGTTGGATTCGTCATACGTGTAAGTAAACTCTCTCGATCTAGACGTGATGGGTCTGCTATTGGACGGGCACTTGTTTGCAATAAAGAGGGTTACAGAATGCCTGACAAGCGCGAAAAGATTGTAAGGCAAAGGGCAGAGACCAGGGTTGGCTGCAGGGCGATGATTTTGGTCAGAAAACTAAGTTCTGGTAAATGGGTGGTTACCAAGTTTGTTAAAGATCACACACATCCTTTGACGCCAGGAAAAGGTAGAAGGGATTGCATTTATGAACAATACCCGAATGAACATGATAAAATCCGGGAACTCTCCCAGCAGTTGACTATAGAGAAGAAGCGAGCTGCAACCTATAAAAGGCATCTTGAATTGATATTTGAGCATATTGAGGAGCACAATGAAAGTCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAAGGAGATGGAAAGCAAAGAACCAGAGTCATAG 918 0.4379 MDRVVGYGPHLADVNRMIWLGNSCSCYELFPRKFRREKDGIPSFGTSEFETLVAAVEFAIDGSIHGETVGNAILRDVGCIEDESKTGGSSVEPTYKLDQGDTLADDSSGGDTIPSGVPAVSVVSAEEPYVGQEFESEAAAHAFYNAYATNVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKLSSGKWVVTKFVKDHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLTIEKKRAATYKRHLELIFEHIEEHNESLSKKIQHIVDSVKEMESKEPES 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1340 305 Coils Coil 281 301 - -
Lele30g1340 305 MobiDBLite consensus disorder prediction 84 116 - -
Lele30g1340 305 Pfam FAR1 DNA-binding domain 143 229 IPR004330 -
Lele30g1340 305 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 56 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1340 Lele-ChrLele30 15684751 15688561 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele30g1340 FAR1 5.9e-30 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1340 30 15684751 15688561 Lele31g1494 31 20243717 20247429 hybridization
Lele30g1340 30 15684751 15688561 Lele32g0052 32 315559 319396 hybridization