LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele30g1337	ATGTCTTCCATTGCCATCTCTTACGGGGAAAAAGGTTCTGTCTTTTGTGGTCTGAGATCCGATGGGTCTCATACTGTGAACTGTTACGGATCAAACTCAGCCATAGTCTATGGAATACCAACCCATTTCCCACTTCTGGGTCTAACAGCAGGTGATGGCTTTGTCTGCGGACTCCTAATGGATACTTTCCAACCTTATTGTTGGGGTAGCAGTGGCTACATCGAAATGGGTGTTCCACAACCTATGACGAAAGGAGCAGAGTATCTAGAAATCAGCGCTGGGGATTATCATGTTTGTGGATTGAGGAAATCCTGGACAGGAAGACACAGAAATATTTCTCTTGTCGATTGTTGGGGTTACAACATGACCCAGAACTATGTTTTTGATGGCCAGATTCAATCTATCTCGGCAGGTTCTGAATTCAACTGTGGGTTATTTTCCCAGAACAGAACAGTCTTCTGCTGGGGAGATGATACTAGTAGCGGAGTAATCAGTTTAGTTCCTAAAGATAAGAAGTTCCAGAAGATTTCTGCAGGTGGGTTTCATGTGTGTGGAATTTTAGAAGGGGTGAATTCCAGAACTATTTGTTGGGGAAGGAGCTTGGGCATTGAGGAAGAAATTGCGGTGAAACGTTCTGGTCAAGGCAACGTTGATTTGGCTCCAAACGAACCTATGCTCTCTGTTGTGGGAGGAAGATTTCATGCTTGTGGCATCAAAACTTATGATCATGGAGTGATTTGCTGGGGTTTTACTATCAAGGGAAGCACCTCAGTTCCTAGTGGGATTAAGGCATTCGAGATTGCTGCTGGGAATTATTTTACTTGTGGAATACTTGCTCAGAAATCTCTTCTTCCTTCTTGTTGGGGTGTTGGATTCCCTACTTCTCTACCATTAGCTGTCTCTCCTGGACTATGCCAGCCTAATCCATGCCCTCCTGGTTTCTATGAAATTGAACAGCAAAAGGGTCTGTGCGAGGCCTCGGATTCTCGCTTTTGCATGCCCTGCAGTGGAGCTTGTCCTGCTGACATGTATCAGAAAAGTGAGTGCAATTATACATCTGACAGACAATGTGAATACAACTGTTCTAGTTGTTCCTCCCCCGAATGCTTCTCCAATTGCTCATTTTCAGATTCCAATGCTAACATGGAGAAGAAAGATGAGAAATTTTGGTCTTTGCAGTTGCCAGTGATGATTGCTGAGATTGCTTTTGCTGTCTTCTTTGTTAGTCTTGTGACCTTAACTTCTGTTTTATATGTTCGCTACAAGCTACGAGGTTGCAGGTGTTCCATAGAAGGATCAAACGTGAAGAAACTTCATGGCAGCAACTCTTCCCTCCAAAAAGAGAACAGCAAGATCAGTCCAGACTTAGAGGAGCTCAAGATCAGGAGGGCCCAAACATTTACCTATGCGGAACTTGAAAGAGCAATAGGTGGGTTCAAAGAAGAATCCATAGTTGGTAAAGGAAGCTTTTCGTGTGTATTCAAAGGAGTATTGAAGGATGGGACTGTTGTAGCAGTTAAAAGGGCCATAATGTCTCCCAACATGCAAAAGAATTCCAAAGAGTTTCACACAGAACTTGACTTACTTTCCAGGTTGAACCATGCCCATTTACTCAACCTGCTAGGTTATTGTGAAGAAGGCGGAGAAAGGCTTCTTGTTTATGAGTTCATGGCGCATGGCTCCTTGCACCAACATCTCCATGGGAAAAACAATGCCTCCAAAGAGCAGTTGGATTGGATTAGAAGGGTCACAATTGCAGTTCAAGCAGCTAGAGGAATTGAATATTTACATGGCTATGCCTGCCCACCTGTGATTCACAGAGACATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCTAGAGTTTCTGATTTTGGCTTGTCATTACTGGGTCCTGCCGATAGTAGCTCCCCTTTGGCCGAACTACCTGCAGGGACGCTCGGCTATCTTGATCCTGAATATTACAGACTCCATTACCTTACCACAAAATCTGATGTATATAGCTTTGGCGTGCTGCTCTTGGAAATTCTGAGTGGTAGAAAAGCCATTGACATGCAATACGATGAAGGTAACATAGTTGAATGGGCCGTGCCTTTGATTAAGGCGGGAGATATCACCCCAATTTTAGACCCAGTTCTAAAACCTCCTCCTGATCTGGAAGCCTTGAAAAGGATTGCAAACGTGGCCTGTAAATGCGTGAGGATGAGAGGGAAAGAGAGGCCGTCAATGGACAAAGTGACAACTGCTTTGGAGCGAGCTCTGGCACAGCTAATGGGTAGCCCAAGCAACGAGCAGCCGATTTTGCCCACCGAGGTTGTGTTGGGAAGTAACAGATTACACAAGAAATCGTCTCAGAGATCTTCGAACAAGTCAACTTCAGAAACGGACATGGGAGAAGCTGAGGATCAAGGGTTCGAGTTCAGAGCACCGTCGTGGATAACGTTTCCGAGCGTTACTTCATCTCAAAGAAGGAAGTCGTCGGTGTCGGAGGGGGACGTGGATGGGAAGAATCCAGAAGCGAAGAACTTGGGGAACGTGGGAGGAGGTGCTGACTTGTTGAGGAGTCTAGAGGAAGAGATTGGGCCGGCTTCTCCTCAAGAGAGGCTCTTTTTGCAGCACAACTTCTGA	2634	0.4514	MSSIAISYGEKGSVFCGLRSDGSHTVNCYGSNSAIVYGIPTHFPLLGLTAGDGFVCGLLMDTFQPYCWGSSGYIEMGVPQPMTKGAEYLEISAGDYHVCGLRKSWTGRHRNISLVDCWGYNMTQNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDDTSSGVISLVPKDKKFQKISAGGFHVCGILEGVNSRTICWGRSLGIEEEIAVKRSGQGNVDLAPNEPMLSVVGGRFHACGIKTYDHGVICWGFTIKGSTSVPSGIKAFEIAAGNYFTCGILAQKSLLPSCWGVGFPTSLPLAVSPGLCQPNPCPPGFYEIEQQKGLCEASDSRFCMPCSGACPADMYQKSECNYTSDRQCEYNCSSCSSPECFSNCSFSDSNANMEKKDEKFWSLQLPVMIAEIAFAVFFVSLVTLTSVLYVRYKLRGCRCSIEGSNVKKLHGSNSSLQKENSKISPDLEELKIRRAQTFTYAELERAIGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNNASKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYDEGNIVEWAVPLIKAGDITPILDPVLKPPPDLEALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPSNEQPILPTEVVLGSNRLHKKSSQRSSNKSTSETDMGEAEDQGFEFRAPSWITFPSVTSSQRRKSSVSEGDVDGKNPEAKNLGNVGGGADLLRSLEEEIGPASPQERLFLQHNF	877

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele30g1337	877	FunFam	Serine/threonine-protein kinase-like protein CR4	1	164	-	-
	Lele30g1337	877	MobiDBLite	consensus disorder prediction	779	796	-	-
	Lele30g1337	877	MobiDBLite	consensus disorder prediction	778	851	-	-
	Lele30g1337	877	Gene3D	Transferase(Phosphotransferase) domain 1	557	767	-	-
	Lele30g1337	877	SUPERFAMILY	RCC1/BLIP-II	14	200	IPR009091	-
	Lele30g1337	877	FunFam	Receptor protein kinase CRINKLY4	557	759	-	-
	Lele30g1337	877	SUPERFAMILY	RCC1/BLIP-II	213	296	IPR009091	-
	Lele30g1337	877	Gene3D	Phosphorylase Kinase; domain 1	449	556	-	-
	Lele30g1337	877	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	1	877	-	-
	Lele30g1337	877	ProSiteProfiles	Protein kinase domain profile.	479	756	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g1337	877	CDD	STKc_IRAK	485	754	-	-
	Lele30g1337	877	SUPERFAMILY	Protein kinase-like (PK-like)	458	752	IPR011009	-
	Lele30g1337	877	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	604	616	IPR008271	GO:0004672\|GO:0006468
	Lele30g1337	877	FunFam	serine/threonine-protein kinase-like protein CCR1	449	556	-	-
	Lele30g1337	877	SMART	serkin_6	479	756	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g1337	877	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	309	357	IPR001368	GO:0005515
	Lele30g1337	877	Pfam	Protein tyrosine and serine/threonine kinase	482	751	IPR001245	GO:0004672\|GO:0006468
	Lele30g1337	877	Gene3D	-	44	300	IPR009091	-
	Lele30g1337	877	ProSitePatterns	Protein kinases ATP-binding region signature.	485	507	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele30g1337	Lele-ChrLele30	15665444	15668077	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele30g1337	1	877	Receptor kinase-like Gene Family	AT3G59420	70.023	0.0	1243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Lele30g1337		PK_Tyr_Ser-Thr	6.4e-44	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele30g1337	30	15665444	15668077	Lele31g1492	31	20228552	20231311	hybridization
	Lele30g1337	30	15665444	15668077	Lele32g0056	32	335350	338109	hybridization