Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1330 ATGGGAGGCTGCATATCCGCGCCGGGCAAGACATTCCCTCGCAGGAGGTCCAAGGAGAGCGCCAAGTCATGCACAGCCAAATCTGACTCCCCCGCGCCGCCGCTGCCGCAAAAAGCCCTCAACGCCCGCCCAATAAACGTCGTGGAGGACCCGGTCCCGGATAGCATCTTTGAAAAGTACGAGTTCGGCAAAGACCTGGGACGCGGCGAGTTCGGCGTGACACACAGATGCGTGGAGATTGAGACCGGGAAGGCGTTCGCGTGCAAGAAGATCGCCAAGACGAAGCTTCGCACGGAGATTGATATCCAAGATGTGAGGAGAGAGGTGCAGATCATGAGGCATTTGCCAAAGCATCCTAATATCGTGAGCTTCAAGGAAGCTTACGAGGACAAGGACGCCGTGTATCTCATCATGGAGCTTTGTGAAGGTGGCGAGCTTTTTGACAGAATCGTCGCTAAAGCCCATTACACAGAACGTGCTGCGGCCAATGTTATCAAAACAATTCTTGAGATTTGCAAGGTTTATCTTTGTCTGGACTTGAAGCCTGAAAAATTCTTATTTGGAGATGCAAGTGAGTCTGCTCCAGTGAAGGCAATTTATTTTGGGCTTTCCACCTTATATGAATCAGGACAGAGGTTTAATGAAATTGTTGGAAGTCCGTATTACATGGCTCCAGAAGTCTTGAGACGTAACTATGGACCAGAAATTGATGTGTGGAGCGCTGGCGTAATCCTTTATATTTTACTTTGTGGAGTTCCGCCCGTTTGGGCAGAATCTGAGGAAGGGATAGCACAGGCCATCATCCGGGGGAACATCGATTTTGAAAGAGATCCTTGGCCTAAGGTTTCAGAAGAAGCAAAAGGCCTGGTTAAAACCATGCTTGATCCAAATCCATACAGCCGATTAAATATTCAAGAAGTTCTTGGTATCCTCCCAATTGAGCAAATAGATTGGATCAAGCAGATGTTCCATATGATGGACAAGGATAAAAATGGAAACTTGTCGTTTGAAGAGCTCAAAGATGGTCTTTCTAGAATTGGACATCCTGTTCCTGATCCTGAAGTGCAGATGTTATTGGACCCAAACAAGAGTGGATTTGTGGAATTTGATGAATTGAGAGATGCCTTGTTGGACGATGACTTAGGTGCCTGTCATGACCAGGTGGTCCATGACACCCTATTTGAAGTCGACTTGGATAAGGACGGCCGAGTCAGTTATGAGGAGTTCAAGGCGATGATGAAGACAGGACCAGATTGA 1257 0.4765 MGGCISAPGKTFPRRRSKESAKSCTAKSDSPAPPLPQKALNARPINVVEDPVPDSIFEKYEFGKDLGRGEFGVTHRCVEIETGKAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPKHPNIVSFKEAYEDKDAVYLIMELCEGGELFDRIVAKAHYTERAAANVIKTILEICKVYLCLDLKPEKFLFGDASESAPVKAIYFGLSTLYESGQRFNEIVGSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPVWAESEEGIAQAIIRGNIDFERDPWPKVSEEAKGLVKTMLDPNPYSRLNIQEVLGILPIEQIDWIKQMFHMMDKDKNGNLSFEELKDGLSRIGHPVPDPEVQMLLDPNKSGFVEFDELRDALLDDDLGACHDQVVHDTLFEVDLDKDGRVSYEEFKAMMKTGPD 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1330 418 ProSiteProfiles EF-hand calcium-binding domain profile. 314 349 IPR002048 GO:0005509
Lele30g1330 418 ProSiteProfiles EF-hand calcium-binding domain profile. 384 418 IPR002048 GO:0005509
Lele30g1330 418 Pfam EF hand 319 345 IPR002048 GO:0005509
Lele30g1330 418 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 339 - -
Lele30g1330 418 ProSiteProfiles Protein kinase domain profile. 60 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1330 418 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Lele30g1330 418 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Lele30g1330 418 SUPERFAMILY EF-hand 311 413 IPR011992 -
Lele30g1330 418 CDD STKc_CAMK 59 308 - -
Lele30g1330 418 FunFam Calcium-dependent protein kinase 1 62 145 - -
Lele30g1330 418 Pfam Protein kinase domain 60 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g1330 418 FunFam Maternal embryonic leucine zipper kinase 52 341 - -
Lele30g1330 418 MobiDBLite consensus disorder prediction 1 41 - -
Lele30g1330 418 Pfam EF-hand domain pair 358 414 IPR002048 GO:0005509
Lele30g1330 418 SUPERFAMILY Protein kinase-like (PK-like) 57 324 IPR011009 -
Lele30g1330 418 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Lele30g1330 418 ProSitePatterns EF-hand calcium-binding domain. 360 372 IPR018247 -
Lele30g1330 418 Gene3D Transferase(Phosphotransferase) domain 1 146 313 - -
Lele30g1330 418 Gene3D - 360 417 - -
Lele30g1330 418 ProSiteProfiles EF-hand calcium-binding domain profile. 358 382 IPR002048 GO:0005509
Lele30g1330 418 CDD EFh 318 414 IPR002048 GO:0005509
Lele30g1330 418 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Lele30g1330 418 SMART efh_1 318 346 IPR002048 GO:0005509
Lele30g1330 418 SMART efh_1 388 416 IPR002048 GO:0005509
Lele30g1330 418 SMART efh_1 354 379 IPR002048 GO:0005509
Lele30g1330 418 Gene3D - 314 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1330 Lele-ChrLele30 15621028 15623208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1330 1 418 EF-hand Containing Proteins AT2G31500 54.581 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele30g1330 Pkinase 3.6e-57 CL0016