Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1329 ATGGACTCCGAGGATGATATGCATGATGCCGACGATGTCGAGTCCCTAGATGATGATTTCTACAGAGGTGAGACAGAGGATGTTCCTTTGGATTACTACAGCTACTACGATGCAGATGCTGATGATTACTTTGTCGATGGTGATGAATCTGACAAGATCGAGTCTCATCGCCCCGAGGATTTCACTGGAATAAGTTGTGGAGGTATAAAAATCGGTTATTTTGAAGCCCCAAGATATATTGTCACGGCTATCAATGATGGTCCGGGATGTTTGATGCTGCGGTATCCTGATCCCTCTTGTGGTGCAGCTGTCGGTCCTATGTTGAAGACAACAAGAAGGCCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATGATACTTGCGAACTCAAAGCCCTGTCCCAAGTGCAAGAGCCCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTGTACCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGCTTCTATGCTTGCAATCGTTATGAGGCTGCTAAACAAGAGGGAGTGTCAAGGCAGAAAGCTCTTGCCGATCTACATCAGATGCAAACAGTCCATCTTGAGAAGCTTAGCGACATACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATCCAATCCATGAAGACACCACAAACGTACATAAAAAAGATGAAAAAGGAGGAGAAAGGGGAAACATTGGAAAAGCGAAAGGGATCAAAGGACAAAACAAAGATACCAAATACTGGTGAAAGTTCTGTGCTATGTTTTGATCGGGATGTGTCAGTAAACATACTTCATCAATGTGCTGAAGAGGAATTGCAGCAGTATGTCAATGCTGATGGCCCATCTAAAGAGTTTAATGACTTCCGAATCAAGCTAGCTGGACTGACTAGTGTGACTAGGAACTACTTTGAGAATTTGGTTATGGCCTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCATCCGGCAAAGCAAAGAGCTCAAAAAATGCCACCGGAAGCAGCAAGGGGAGAGGTGAAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGACTGATGATAGTAATTGGTATTGTGAACACTGTACCTATGCAAATACTATGTCTGTTAACCCATGCCAAATGTGTGCTATACAGCGTCGATAA 1296 0.4406 MDSEDDMHDADDVESLDDDFYRGETEDVPLDYYSYYDADADDYFVDGDESDKIESHRPEDFTGISCGGIKIGYFEAPRYIVTAINDGPGCLMLRYPDPSCGAAVGPMLKTTRRPSGVLLQDVNMQLHLMLVVEIMMFLASVLIASAGMILANSKPCPKCKSPIEKNQGCMHMTCTPPCKFEFCWLYLGAWSEHGERTGGFYACNRYEAAKQEGVSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIQSMKTPQTYIKKMKKEEKGETLEKRKGSKDKTKIPNTGESSVLCFDRDVSVNILHQCAEEELQQYVNADGPSKEFNDFRIKLAGLTSVTRNYFENLVMALENGLSDVDSNGAASGKAKSSKNATGSSKGRGERGKGTTRTSSSNKMTDDSNWYCEHCTYANTMSVNPCQMCAIQRR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1329 431 Pfam IBR domain, a half RING-finger domain 152 193 IPR002867 -
Lele30g1329 431 Gene3D - 143 362 - -
Lele30g1329 431 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 151 258 IPR031127 GO:0004842|GO:0016567
Lele30g1329 431 MobiDBLite consensus disorder prediction 364 401 - -
Lele30g1329 431 MobiDBLite consensus disorder prediction 269 288 - -
Lele30g1329 431 MobiDBLite consensus disorder prediction 1 23 - -
Lele30g1329 431 ProSitePatterns Zinc finger RanBP2-type signature. 407 426 IPR001876 -
Lele30g1329 431 SUPERFAMILY RING/U-box 143 207 - -
Lele30g1329 431 ProSiteProfiles TRIAD supradomain profile. 1 207 IPR044066 -
Lele30g1329 431 MobiDBLite consensus disorder prediction 269 289 - -
Lele30g1329 431 MobiDBLite consensus disorder prediction 1 21 - -
Lele30g1329 431 MobiDBLite consensus disorder prediction 364 382 - -
Lele30g1329 431 SUPERFAMILY Ran binding protein zinc finger-like 403 430 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1329 Lele-ChrLele30 15615069 15619692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1329 79 430 ARIADNE family AT1G65430 42.955 2.75e-95 295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1329 30 15615069 15619692 Lele31g1483 31 20187218 20192872 hybridization
Lele30g1329 30 15615069 15619692 Lele32g0067 32 379858 385277 hybridization