Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1328 ATGACAAAGGAAAAGGCAAATGGACAAGATGAAAGATCCAGTCTTTGCTCTGCAAAATATCACTGCAATGAGTCAATGGCTAATTCCCTTCGCAGTAATGTTCAGGTCTTTCTTCAGCTATTCCTCCTCCCCCAGCCGCCGCTTTACACTCTCAATCTTGCCCGAATTCCGACTTCTAGGGTTCGCTCCATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGATGTTCCTATGGATTACTACAGCGACTACGATGATGATGCTGATGATTATTTTGATGATGGCGATGAATCTGACAAGACTGCGTCTCGTCCCGAGCAAAATTTTACCATCCTGAGGGAATCAGATATTCGGCAAAGACAAGAGGATGACATAACAAGAGTAGCGACTGTTCTTTTTATCTCGCCAGAGGCTGCAAGCATCTTACTTCGTCACTATAATTGGAATGTCAGTGAAGTTCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGCTTACCGGAGAAGCCAGTTGTCCAGTTTCCTAACGCTAGGGAGCTTACTTGTGGCATCTGTTTTGAAACTTATTCCTGTTCACGGATCAAATCTGCTGGTTGTGGTCATCCCTTCTGCATCTCATGCTGGGAAGGGTATATTGGCACGGCTATTAGTGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTGACCAATTAGCATCTGTTGAGGATAAGCAGAAGTATTCTCGCTACCTTCTTAGGTCCTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCTGGTTGTGAATATGCGGTTACATTTGATGCTGGTAGTGGAAACTATGATGTGTCTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTCCTGTGGATTGTGGCACTGTCGCAAAGTGGATCTTGAAGAATAGTGCAGAATCTGAGAACATGAACTGGATTCTTGCCAACTCCAAGCCCTGTCCCAAGTGCAAGAGACCGATTGAGAAAAACCAAGGGTGCATGCATATGACATGTACACCCCCTTGTAAATTTGAATTTTGCTGGCTTTGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACGGGGGGTTTCTATGCTTGCAATCGTTATGAGGCGGCTAAACAAGAGGGAGTGTATGATGAAGCTGAAAGAAGAAGAGAGATGGCAAAGAACTCCTTGGAGAGATACACACATTATTATGAGCGGTGGGCAAGCAATCAATCATCGAGGCAAAAAGCTCTTGCAGATCTACATCTGATGCAAACTGTCCATCTTGAGAGGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTTAAATTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCATATGGATACTACTTACCAGAGCATGAGCATGCTAAAAAACAATTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTAGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAATATCTCAATGCCGATGGCCCATCTAAAGAGTTCAATGACTTCCGGACCAAGCTAGCTGGACTAACCAGCGTGACTAAAAACTACTTCGAGAATTTGGTTAGGGCTTTAGAGAACGGTTTATCTGATGTAGATAGTAATGGAGCTACTTCGAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAAGTACACGAACCAGCGGTTCCAATAAAATGACGGATGATAAAGTATTGTGA 1887 0.4499 MTKEKANGQDERSSLCSAKYHCNESMANSLRSNVQVFLQLFLLPQPPLYTLNLARIPTSRVRSMDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDYDDDADDYFDDGDESDKTASRPEQNFTILRESDIRQRQEDDITRVATVLFISPEAASILLRHYNWNVSEVHEAWFANEEHVRRTVGLPEKPVVQFPNARELTCGICFETYSCSRIKSAGCGHPFCISCWEGYIGTAISDGPGCLMLRCPDPSCGAAVGQDMIDQLASVEDKQKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHLMQTVHLERLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNADGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSNGATSSKATSSKNAAGSSKGRGGRGKGSTRTSGSNKMTDDKVL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1328 628 CDD RING-HC_RBR_TRIAD1_like 201 251 - -
Lele30g1328 628 MobiDBLite consensus disorder prediction 70 85 - -
Lele30g1328 628 MobiDBLite consensus disorder prediction 583 602 - -
Lele30g1328 628 Coils Coil 411 438 - -
Lele30g1328 628 Gene3D - 328 583 - -
Lele30g1328 628 Pfam Ariadne domain 419 580 IPR045840 -
Lele30g1328 628 ProSiteProfiles Zinc finger RING-type profile. 201 245 IPR001841 -
Lele30g1328 628 MobiDBLite consensus disorder prediction 102 122 - -
Lele30g1328 628 SUPERFAMILY RING/U-box 197 282 - -
Lele30g1328 628 FunFam RBR-type E3 ubiquitin transferase 195 284 - -
Lele30g1328 628 Pfam IBR domain, a half RING-finger domain 270 332 IPR002867 -
Lele30g1328 628 Pfam IBR domain, a half RING-finger domain 349 397 IPR002867 -
Lele30g1328 628 MobiDBLite consensus disorder prediction 609 628 - -
Lele30g1328 628 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 125 498 IPR031127 GO:0004842|GO:0016567
Lele30g1328 628 SUPERFAMILY RING/U-box 271 339 - -
Lele30g1328 628 MobiDBLite consensus disorder prediction 583 628 - -
Lele30g1328 628 MobiDBLite consensus disorder prediction 62 85 - -
Lele30g1328 628 SUPERFAMILY RING/U-box 351 399 - -
Lele30g1328 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 285 IPR013083 -
Lele30g1328 628 ProSiteProfiles TRIAD supradomain profile. 197 410 IPR044066 -
Lele30g1328 628 SMART ibrneu5 270 332 IPR002867 -
Lele30g1328 628 SMART ibrneu5 336 406 IPR002867 -
Lele30g1328 628 FunFam RBR-type E3 ubiquitin transferase 333 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1328 Lele-ChrLele30 15606881 15613520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1328 80 605 ARIADNE family AT1G65430 73.070 0.0 810