Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1317 ATGGAGTCAGATCTTGAGCAGCACTCTTCAATGTTACATGGTCATCAGCAGCAGCAGATGAATTCTTCTGGTTTGATGCGGTATCGATCGGCGCCAAGCTCGTATTTTACGAATATCATAGACAAGGAAGTTTACGAGGACATGTTCAATCGGCCTTCCAGCCCCGAAACAGAGCGAATTTTTTCACGGTTTATGAACAGCCTTGCTAATGAGTCAGAAGACGCACCGGCTCAATATCTTTCATCTGTTCGACAAAATTCTGCAGTGAAGGAAGAAGAGATGGACCAGCAGTCTCAGGCTATGCCCCCCGTGAACAATGAACCGGTGTCTCTCCACCAGCAGCAGCAGAACAGTGTTAGTAATTTTGTTTCTGCTCCGCAGAATCTTTTCCAAAGCTCAGGGCGTCCACAGAGCTTGACGTCATCAACTATGGACGGAGTTTATTCGAGGGGTGGTCATCGATTGCCACATGTGAAGGCTCTTGATGCAAATAATTCCAATCTAATCAGGCACAATAGCTCACCTGCAGGACTCTTCTCCACCATAAACATTGAAAGCTATACTTCTATGAGAGGCACAGGCATATTGGGAGCTGGTACTAACACTAGCGAAGAAGCAAGCTTCTCTTCTGCGTTGAGGATGAAAAATCCGCCAAAATACTCGACAGGCGTAATGTCATCCATAGCTGAAGTTGGGGACAAAGGCTACACAGAACATAATCAAGACCCTGAATCTTTTGCTGAAAGCCAAGGTAATGAGTTTATCACAGGTTTTCCCCCTTGGGACGATTCTGTACTCATGTCTGACAATACTGCTGGACTCAAAAGATTTAGAGACGAGGATGCAAAAACATTTTCTGAGACTCAGAACGAGACAGGCAGCCAGCCACGTCCCGCTCCTCTGGCTCATCACCTCAGTTTGCCAAAAACTTCAGCGGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTTTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTTAGGAGAACTAAGATCAGTGAGCGTATGAGGAAACTTCAAGACCTGGTCCCCAACATGGACAAACAAACAAACACGGCAGACATGTTGGACTTGGCTGTCCACTACATTAAAGACCTTCAAAAGCAGGTTGAGACGCTTTCAGACAGTCACGCGAAGTGCACGTGTCCACACAAGCAGCAGTAA 1227 0.4645 MESDLEQHSSMLHGHQQQQMNSSGLMRYRSAPSSYFTNIIDKEVYEDMFNRPSSPETERIFSRFMNSLANESEDAPAQYLSSVRQNSAVKEEEMDQQSQAMPPVNNEPVSLHQQQQNSVSNFVSAPQNLFQSSGRPQSLTSSTMDGVYSRGGHRLPHVKALDANNSNLIRHNSSPAGLFSTINIESYTSMRGTGILGAGTNTSEEASFSSALRMKNPPKYSTGVMSSIAEVGDKGYTEHNQDPESFAESQGNEFITGFPPWDDSVLMSDNTAGLKRFRDEDAKTFSETQNETGSQPRPAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGFATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVHYIKDLQKQVETLSDSHAKCTCPHKQQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1317 408 MobiDBLite consensus disorder prediction 1 24 - -
Lele30g1317 408 MobiDBLite consensus disorder prediction 10 24 - -
Lele30g1317 408 FunFam Transcription factor bHLH130 family 338 407 - -
Lele30g1317 408 Pfam Helix-loop-helix DNA-binding domain 343 388 IPR011598 GO:0046983
Lele30g1317 408 Gene3D - 339 407 IPR036638 GO:0046983
Lele30g1317 408 MobiDBLite consensus disorder prediction 84 118 - -
Lele30g1317 408 SMART finulus 343 393 IPR011598 GO:0046983
Lele30g1317 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 401 IPR036638 GO:0046983
Lele30g1317 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 403 - -
Lele30g1317 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1317 Lele-ChrLele30 15532067 15534409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1317 1 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.505 7.92e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele30g1317 HLH 1.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1317 30 15532067 15534409 Lele31g1469 31 20076751 20079101 hybridization
Lele30g1317 30 15532067 15534409 Lele32g0077 32 449796 452076 hybridization