Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1313 ATGGGCTCAATGAACTCAAACAACTGGCTTTCCTTCCCTCTTTCCCCTACTCAGTCTTCCTTACCTCCACAGATCCAAGCCACTCAATCCCATCAGTTTTCTCTTGGCTTAGTCAATGATTCCATGGAAAACCCATTCCAAAACCACGATTGGAATCTGATGAATACACACGGCAGCAACGTTAATGAAGTTCCGAAGGTTGCAGATTTTCTAGGAGTGGGAAAGTCTGATAATCAGTCAGATCTTGCAGCCTTTAATGAAATTCAGTCAAATGATTCGAGCTACCTATTCACAAATAGCAGTCTGGTGCCGATGCAAAGCTCAGTGGTGGCCACATCTTGCAACTTAGAGTATCAAGAAAACAATGCTAACTCTAACTTGCAGTCTTTGACATTATCCATGGGCAGTGGTAAGGATTCTACCTGTGAAACTAGTGGCGACAACAGTACTAATACTGCAGTGGAAGCTGCTGCACCTCGAAGAACTCTAGATACATTCGGTCAGAGAACTTCAATCTATCGAGGTGTAACCAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGACAATAGTTGTAGAAGGGAAGGACAATCACGAAAGGGACGCCAAGGTGGATATGACAAAGAAGAGAAAGCAGCTAGGGCCTACGATTTAGCAGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCAAATCAGTAACTATGAGAAGGAACTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTTGCCGCCATACGAAGGAAGAGCAGCGGGTTCTCTAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCATCATCAACATGGGAGATGGCAGGCAAGGATCGGTAGAGTTGCGGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACTGAGGAAGAAGCTGCAGAAGCATACGACATAGCGGCGATCAAGTTCAGGGGACTAAACGCGGTGACAAACTTCGACATGAGCCGTTACGATGTGAAAGCCATACTTGAGAGCAACACGCTTCCAATCGGAGGAGGAGCTGCTAAACGACTGAAGGAAGCTCAAGCTCTGGAATGTTCAAGAAAAAGAGAGGAAATGATAGCACTCGGATCAAGCTTTCCGTACGGCAGCGGCAGTGGCGGAGGGGGCAGCTCTAGCAGGCTTCAACTACAAGCCTACCCATTGATGCAGTTGGATCAGACTCAACCATTGTTAAGCCTACAGAACCAGGAGATATCTCAGTACTCATCACTTCATCATCCCAGTTATATCCAAACCCAGCTTCAGTTGCACCATCAAACTGGTTCTTCTAACTACAACTTTCACCAATCACCCAGCAATAACGCTCAGTTGTATAATAGCTATCTTCAGAACCACCCGGCTCTGCTTCAGGGTTTGATGAACATGGGTTCTTGTTCTTCTTCTGTGATGGACAATGATGGAGGGTCAAGTGGGAGTTACAGTGGAGGAGGAGGGTTTATGGGCATGGCTTCTAATACCCCGTCGGTGGGATCCGCGGAGGAGCTGGCGCTGGTTAAGGTTGAGAACTACAATATGCCTTCCGGTAGTTACGGCGGCGGCGGCTGGCCGTCGGAGTCCATGCAGGGATCCAATGCTGCTCTCTTTACAATGTGGAATGACTGA 1647 0.4718 MGSMNSNNWLSFPLSPTQSSLPPQIQATQSHQFSLGLVNDSMENPFQNHDWNLMNTHGSNVNEVPKVADFLGVGKSDNQSDLAAFNEIQSNDSSYLFTNSSLVPMQSSVVATSCNLEYQENNANSNLQSLTLSMGSGKDSTCETSGDNSTNTAVEAAAPRRTLDTFGQRTSIYRGVTRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFQISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREEMIALGSSFPYGSGSGGGGSSSRLQLQAYPLMQLDQTQPLLSLQNQEISQYSSLHHPSYIQTQLQLHHQTGSSNYNFHQSPSNNAQLYNSYLQNHPALLQGLMNMGSCSSSVMDNDGGSSGSYSGGGGFMGMASNTPSVGSAEELALVKVENYNMPSGSYGGGGWPSESMQGSNAALFTMWND 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1313 548 SUPERFAMILY DNA-binding domain 268 329 IPR016177 GO:0003677
Lele30g1313 548 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 Pfam AP2 domain 173 225 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 SMART rav1_2 269 333 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 SMART rav1_2 172 239 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 FunFam AP2-like ethylene-responsive transcription factor 268 329 - -
Lele30g1313 548 Coils Coil 546 548 - -
Lele30g1313 548 CDD AP2 171 235 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 Gene3D AP2/ERF domain 172 235 IPR036955 GO:0003700|GO:0006355
Lele30g1313 548 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Lele30g1313 548 ProSiteProfiles AP2/ERF domain profile. 172 233 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 CDD AP2 268 329 IPR001471 GO:0003700|GO:0006355
Lele30g1313 548 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 414 - -
Lele30g1313 548 SUPERFAMILY DNA-binding domain 171 235 IPR016177 GO:0003677
Lele30g1313 548 ProSiteProfiles AP2/ERF domain profile. 269 327 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1313 Lele-ChrLele30 15504266 15506946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1313 4 548 AP2-EREBP Transcription Factor Family AT3G20840 64.094 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele30g1313 AP2 1.7e-05 CL0081