Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1311 ATGGACCATGACAGGACTGGATGTCAAGCTCCTCCAGAAGGTCCTATATTGTGCATCAATAACTGTGGATTTTTTGGAAGTTCTGCCACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATGTTGAAACAGGAACAGGCCAAGCTTGCGGCATCGTCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAACCTGTTGTTTCTGCAAATGTGAATATCCCAGTCAATTCCCTAGAGCCTAAAACGACATCCGAAGAACCTTTTTTGACTTCAGGCTCAAAGGAGAGTGGTGAGGCAAAGCCGAAGGATGGACCCAAACGCTGCAGCAGCTGCAATAAGCGGGTTGGTTTGACAGGGTTCAGTTGTCGGTGCGGTAACCTTTTCTGTGCTGCACACCGCTACTCAGACAAGCATGATTGCGCCTTTGATTACCGCACTGCGGGAAGGGATGCCATAGCTAAAGCAAACCCAGTTGTTAAGGCTGAAAAGCTTGATAAGATCTAG 519 0.4701 MDHDRTGCQAPPEGPILCINNCGFFGSSATMNMCSKCHKDMMLKQEQAKLAASSIGNIMNGSSSSSGNEPVVSANVNIPVNSLEPKTTSEEPFLTSGSKESGEAKPKDGPKRCSSCNKRVGLTGFSCRCGNLFCAAHRYSDKHDCAFDYRTAGRDAIAKANPVVKAEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1311 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lele30g1311 172 FunFam Zinc finger AN1-type containing 6 86 168 - -
Lele30g1311 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lele30g1311 172 Gene3D - 5 70 - -
Lele30g1311 172 MobiDBLite consensus disorder prediction 80 96 - -
Lele30g1311 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lele30g1311 172 SUPERFAMILY AN1-like Zinc finger 97 167 IPR035896 -
Lele30g1311 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Lele30g1311 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lele30g1311 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lele30g1311 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Lele30g1311 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lele30g1311 172 Gene3D - 87 168 IPR035896 -
Lele30g1311 172 MobiDBLite consensus disorder prediction 80 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1311 Lele-ChrLele30 15499018 15499536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1311 8 172 C2H2 Transcription Factor Family AT3G52800 43.931 3.64e-38 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1311 30 15499018 15499536 Lele31g1464 31 20043885 20046510 hybridization
Lele30g1311 30 15499018 15499536 Lele32g0083 32 486203 486721 hybridization