Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1310 ATGACCCATCCCTTCTTCCCCAATCATTTCAGTGCCTGCCTTGACCTCAATTCTCCTTATTCCCTCCTCTCTCTTTCTTCTTCTTCTTCTTCTTCTTCATCTTGCACCAATCCACCTTCCTATAATTTTCTCTCTGCTCCACATCACTGCATCAATGGCACCTCCCTTATCTCTCCTCACTACCACCAATCCTTGCCTTCCTCCCCTGCTGTAAGAGAGCCCCTTCCTCTTCTTAACCTCACCCCTTCCATTCCTCAAGATCCAGAATCTTGCTGCGCTTCCATGGAAATTGACCACAAGGACAAACACTTGGATGACGAAGCTCTGACGGTGGCTTTACGCTTAGGTCTTCCAAGCGTAGATTCAGCTGATTTAGTTTCAGACAAAGAACAAGTCACCGTCGCTTCTGCGTGTCCATCCACTGGGATCAATAGGGGTCAGTACTGGATCCCTACCCCTGCTCAGATTCTGATCGGTCCGACGCAGTTCTCGTGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTGAATATAGAAAGGGAGCAGAGTCTCTGAGGGGGACGCAGCCAACAGCGATGCTGAGGCTGCCTTGTTATTGTTGCGCTGCAGGATGCAAGAACAACATTGAGCATCCAAGGGCCAAACCACTCAAAGACTTCCGAACCCTTCAGGCCCATTACAAGCGAAAGCACGGAATGAAGCCTTTCATGTGTAGAAAATGCTGCAAATCCGTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGCGGCAAGCTCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGATCTCTTAAAGATCATATCGAGGCCTTTGGACATGCCCACACCGCTTGCTCCATTCATTCTCTTGATCAAGATGATGAACCAGCCTCTGAAATCGAACAAGAAAATCAGCCCTTCCACTCCTAA 978 0.4806 MTHPFFPNHFSACLDLNSPYSLLSLSSSSSSSSSCTNPPSYNFLSAPHHCINGTSLISPHYHQSLPSSPAVREPLPLLNLTPSIPQDPESCCASMEIDHKDKHLDDEALTVALRLGLPSVDSADLVSDKEQVTVASACPSTGINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGAESLRGTQPTAMLRLPCYCCAAGCKNNIEHPRAKPLKDFRTLQAHYKRKHGMKPFMCRKCCKSVAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIEAFGHAHTACSIHSLDQDDEPASEIEQENQPFHS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1310 325 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Lele30g1310 325 PANTHER ZINC FINGER PROTEIN WIP2 29 321 IPR043584 GO:0003700|GO:0010468
Lele30g1310 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Lele30g1310 325 FunFam Zinc finger protein WIP2 216 298 - -
Lele30g1310 325 Gene3D Classic Zinc Finger 162 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1310 Lele-ChrLele30 15487962 15490084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1310 128 318 C2H2 Transcription Factor Family AT3G57670 79.058 1.14e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g1310 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1310 30 15487962 15490084 Lele31g1463 31 20038999 20041064 hybridization
Lele30g1310 30 15487962 15490084 Lele32g0084 32 492055 494152 hybridization