Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1309 ATGAGTTGGAACACACACTTGGAGGTCCACTACAACAATATCAGCTATCCCTACAATACAGCGGGAAGCTTTATTGAATATTTTGAAGGTCTAACATACGAACACGTCAATTTCATTTTTTCTGGTGCTTCACATGCTCAGGAGAGCCTGTACCCATCAAGTACAAGTTTATACAAGTTTGGCCCATCTGAGCCTGAGAATACTTCATACTATCGTTACAGTGATGATTATGAAGTGAATAATCATGACCCTCGGATGGATGAGCACAGAAGGCCTTTAGAGAACACAGCAATATTTAGTGAGCATGCTGCAGCAGCAAGTACAGAATGGGGTGAAGGTGTAAACACCACTGCACGAGAGAATTCTGTTGAGTGCCCAAGAAGACATCATAATTCTAATGACTATCAGGTCACTTGGCAAGACAATATTGATCCTGACAACATGTCCTATGAGGAATTACTCGAGTTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGCCTCTCCCAAGAACAGATCTCTTTGCTTCCTGTTTCAAAGTACAAGTGTGGTTTGTTTTTACGCAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAGGAGAGGGGAAAAACGGATCACCTTACCTTGCAAACATGTCTATCATGCTGGTTGTGCGACAACATGGCTTGGCATCAACAAGGCTTGCCCCATATGTTACACGGAGGTGTTTGCTGGTATGTCAAAACGCAAATGA 744 0.4301 MSWNTHLEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESLYPSSTSLYKFGPSEPENTSYYRYSDDYEVNNHDPRMDEHRRPLENTAIFSEHAAAASTEWGEGVNTTARENSVECPRRHHNSNDYQVTWQDNIDPDNMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGLFLRKKSRDERCVICQMEYRRGEKRITLPCKHVYHAGCATTWLGINKACPICYTEVFAGMSKRK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1309 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Lele30g1309 247 Pfam Ring finger domain 194 235 IPR001841 -
Lele30g1309 247 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Lele30g1309 247 SUPERFAMILY RING/U-box 191 241 - -
Lele30g1309 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Lele30g1309 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 240 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lele30g1309 247 SMART ring_2 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1309 Lele-ChrLele30 15476274 15480224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1309 8 241 C3H Transcription Factor Family AT3G63530 43.750 1.06e-67 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1309 30 15476274 15480224 Lele31g1462 31 20029486 20033663 hybridization
Lele30g1309 30 15476274 15480224 Lele32g0085 32 500496 504411 hybridization