Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1286 ATGAGTGAAAGTAGAGAGAAAGAAAAGCAGAAAATGGAGGAGGCAAACACTGGCCGCAACAGGTGGTCTCTTCAGGGCATGACGGCTCTTGTTACCGGTGGAACCAAAGGAATTGGGTATGCTATTGTGGAGGAGTTGGCACAGTTAGGAGCTGTCGTACACACTTGCTCTAGGAATGAATCTGAGCTTAATGAATGCTTACAACTATGGAATGCTAAGGGATTTCAGGTTTCTGGTTCTGTTTGCGATATGGCGTCTTCTGCACAAAGACAAGAACTTATAACTAAAGTCTGCTGTGTGTTTCAGGGCAAACTCAACATCCTTGTGAACAATGTGGGAACAAACATAGTAAAACCAACCCTAGAGTATACAGCAGAAGATTTCTCATTTCTGATTAGTACAAATTTGGAATCAGCATACCATATAAGCCAAATTGCGCACCCTCTTCTAAAAGCTTCAAACGCTGCAAGCATTGTTTTCGTATCCTCCGTTGCTGGGGTGTCAGCGATAAACCGAACATCAATATATGGTGCAACGAAAGGAGCAATGAACCAGCTAACCAGGAACCTGGCATGTGAGTGGGCAAAAGACAATATAAGGACCAATTGCATTGCACCAGGCCCCATTAAGACGCCCCTCTCTGGAGAATTTTTGAAAGATGAAAAGGTATATGAGAATTTCATTAAAAGGATACCTTTGCAACGGATTGGGGAGCCAAACGAGGTGTCTTCCATGGTGGCATTCCTCTGCTTACCAACAGCCTCATACATAACGGGACAGATCATTTGCATCGACGGAGGATTTACGGTGTTTGGCTTGTGA 822 0.4404 MSESREKEKQKMEEANTGRNRWSLQGMTALVTGGTKGIGYAIVEELAQLGAVVHTCSRNESELNECLQLWNAKGFQVSGSVCDMASSAQRQELITKVCCVFQGKLNILVNNVGTNIVKPTLEYTAEDFSFLISTNLESAYHISQIAHPLLKASNAASIVFVSSVAGVSAINRTSIYGATKGAMNQLTRNLACEWAKDNIRTNCIAPGPIKTPLSGEFLKDEKVYENFIKRIPLQRIGEPNEVSSMVAFLCLPTASYITGQIICIDGGFTVFGL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1286 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 271 IPR036291 -
Lele30g1286 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 163 191 IPR020904 GO:0016491
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 232 252 IPR002347 -
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 176 195 IPR002347 -
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 197 214 IPR002347 -
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 28 45 IPR002347 -
Lele30g1286 273 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Lele30g1286 273 Pfam Enoyl-(Acyl carrier protein) reductase 35 269 - -
Lele30g1286 273 FunFam Short-chain dehydrogenase reductase 12 271 - -
Lele30g1286 273 PANTHER TROPINONE REDUCTASE 20 270 IPR045000 GO:0016491
Lele30g1286 273 Gene3D - 7 272 - -
Lele30g1286 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Lele30g1286 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Lele30g1286 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 176 195 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1286 Lele-ChrLele30 15357912 15359215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1286 21 273 Miscellaneous Gene Families AT2G29290 65.217 1.62e-121 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1286 30 15357912 15359215 Lele09g1259 09 21385993 21387816 CCT
Lele30g1286 30 15357912 15359215 Lele10g1234 10 23407817 23409649 CCT
Lele30g1286 30 15357912 15359215 Lele11g1262 11 19563997 19565814 CCT
Lele30g1286 30 15357912 15359215 Lele12g0060 12 548875 550707 CCT
Lele30g1286 30 15357912 15359215 Lele31g1442 31 19913176 19914368 hybridization