Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1280 ATGGGGGAGGAGGTCAAGATGACCGATTACGACGGCGCTTCTCCCGATGATGACGAGAGAATCCTCGAATGGGAGTTGGGCCTCCCTACTGCCGATGATCTCACCCCCCTCTGTCAGCCCCTGATCCCGCCGGAGCTCGCCTCTGCCTTCAGCATCTCGCCGGAGCCCAGCCGGACTCTCCTCGACGTGAATCGTGCCTCCAAGAATACTCTGACGAATCTTCGCGGCGGAAGCTCTCAGGCCTTTTCCTCAAATAATTTCAAATCGCTCAACGATGACGGCTGTCGAGACCCCATCGTGGTGGAGGCCGATCGACATGGGTCGGGGTCCGATTCTCGGGAACTCAGGAAGATCGACTGCACCGAAGAAGCTGATTCGGCTCTGCGGACTGAGAATTCGACGGATGATCCGTCCGCTCGGACCTTAAAGCGGCCTCGGCTTGTATGGACTCCGCAGTTGCACAAGCGGTTTGTGGATGTGGTGGGTCACCTGGGAATCAAGAACGCCGTGCCGAAGACGATTATGCAATTGATGAACGTCGAAGGATTGGCCCGAGAAAATGTCGCTAGCCATCTTCAGAAGTATCGGCTTTACTTGAAGAGGATGCAGGGTTTATCCAACGAGGGACCTTCATCGTCGGACCAGCTCTTCGCTTCCACCCCGGTGCCGCAGAGCTTACACGAGTCTGGTGGAAGTGGGCACTCCCATGGAAACGGGCATCTTCCGGTGCCGATTCCGATGCTATATCCCCCGCCGATGATGCCCATGCCGGTTCTTGGAATGGCCCATGGTCAGGGTTATCCTCATGCTCACGTGGGAATGCAGGTCGCCAATCATGGGTTCGACTCACATCCATATAATATGTTGCCGCAAAGGGATTGGTCCGGCAATAAATTTGCTTCGGCTGTATCAGACCCTCACGTTACTACTAATGATAAATGA 942 0.5541 MGEEVKMTDYDGASPDDDERILEWELGLPTADDLTPLCQPLIPPELASAFSISPEPSRTLLDVNRASKNTLTNLRGGSSQAFSSNNFKSLNDDGCRDPIVVEADRHGSGSDSRELRKIDCTEEADSALRTENSTDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLARENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGSGHSHGNGHLPVPIPMLYPPPMMPMPVLGMAHGQGYPHAHVGMQVANHGFDSHPYNMLPQRDWSGNKFASAVSDPHVTTNDK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1280 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 145 197 IPR006447 GO:0003677
Lele30g1280 313 Gene3D - 141 203 - -
Lele30g1280 313 Pfam Myb-like DNA-binding domain 148 196 IPR001005 -
Lele30g1280 313 SUPERFAMILY Homeodomain-like 141 201 IPR009057 -
Lele30g1280 313 MobiDBLite consensus disorder prediction 206 239 - -
Lele30g1280 313 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 276 IPR044841 GO:0003700|GO:0006355
Lele30g1280 313 MobiDBLite consensus disorder prediction 206 232 - -
Lele30g1280 313 FunFam Two-component response regulator 140 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1280 Lele-ChrLele30 15327691 15328632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1280 1 287 G2-like Transcription Factor Family AT3G46640 56.106 4.95e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele30g1280 Myb_DNA-binding 2.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1280 30 15327691 15328632 Lele31g1433 31 19881732 19882685 hybridization
Lele30g1280 30 15327691 15328632 Lele32g0114 32 652428 653369 hybridization