Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1278 ATGAGTTTCGTCTTCCGAGGGAGTAGAGGAGATATGGAAAGTGGATTTTCAGAATATGTTCCCGAAAGAGCCACGATGCGTGTCCATCCAACTCGGCCAGTAAATAGCAATACTCTAGCTTTTCTCATTACAGTTATCTTGCTGTTTATGATATTGAACTCTCCCCAAATGTCACATTTTTTGATGTGGCTTATGCTGGTTGTGTTTGTGATGGCCACAAGCCTGAGGATGTATGTAACTTGGCAACAGCTTCAAGCTCAAGCAAGGGCTCATGCTGCCGCAGCTGAATTACAACTTCACGTGCCACCATCGATAGCAATTGCAACTAGAGGACGCTTGCAAGGACTCAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATAATGAAACGTTGAGGGCTCTGGAATCTGATACTGCTTCTAGTACCACTTCAATGGCTGATGAAGAGATAAATGCTTTACCTGTTCACACATATAAAGTTCATGTCCCAACAAAGGATGGCTCAGCTGGGTCGGCATCCTCTTCACGAGCAACCAAGGTTAAGCAAGAGAATGGAGGGACAGAGGGAATTGTGAAGGGTACTGAAGATGACCTAACGTGTACTATATGTTTGGAACAAGTGAAGAGAGGGGAGCTAGTTCGTAGCTTGCCATGTTTGCATCAGTTTCATATGAACTGCATCGATCCATGGCTGAGACAGCAAGCAAAATGCCCAGTGTGTAAATTTAGGATGGGGTCTGGATGGCAGGCAAATAGGGGGGATATTCTATTAGGATTGATTTATATGACTGGCCATAAGGAGAGGGAAGCCAAAGTGTTGGAACTTGAAGGAGGAAGAACATCCCAAGAGCAAGCTCGAGAGGTTGAATTGGAAGAGAGGGAAGCCAAAGTGTTGGAACTTGAAGGAGGAAGAACATCCCAAGAGCAAGCTCGAGAGGTTGAATTGGAAGGGAATGGCAAAGACTTGAAGAAGCTTTTGTCGGCTGAAGAAAAGGTGGGTAAAGTTGATAAATGTTACAAGGCTATGCCACACAAAGAGCATGGTGACGGTGAACGGGAAGTTTCCAGGACCTCGTGTTGTTGCCAGAGAAGGGGACAGGTTATTGGCGCAACGAATCTTATCCTTTTCCCAAACCCTACAAGGAACATACCATCCTCTTCGGAGAGTGGTGGAATGCGGACCCTGAGGCTGTCATTTCACAAGCTCTTCAGACAGGTGCGGGCCAATGTCTCCGATGCCTACACCTTTAATGGACTCCCTGGGCCCCTCTACAATTGCTCTGCTCATGACACGTTGAGGATAAAAGTGAAAGCAGGAAAGACGTACATGCTCCGACTGATCAACGCTGCACTCAACGACGAGATCTTCTTCCGAATAGCTAACCACAGCCTCACTGTAGTCGAAGCCGATGCATCTTACGTCAAGCCCTTCACTTCCGACACCATCCTCGTCGCACCCGGACAAACAACAAACGTCCTTCTCCGAACAAAACCATTTTACCCCAACGCCACTTTATTCATTCTAGCCCGACCCTACTTCACTGGAATGGGCACTTTCGACAATTCCACTGTTGCTGGCATCCTTGAATATCAAAACCCCTCCAACATTAACCATGTTGGTTTGAATCGTCTCCCCCTCTTGAAACCTGCCCTTCCTGCTATCAATGAAACTTCTTTTGTCGCCAACTTCAGCGGCAAATTTCGTAGTTTGAATAGTCCCAAGTACGCAGCCAACGTGCCCCAGAAAGTGGACAGGCACTTTTTCTTCACTGTGGGCCTTGGGAGCAGCCCATGCCCAAAAAACCAAACCTGTCAAGGGCCCACTAATTCGTCCAAATTTCAGGCTTCCATGAATAACATATCCTTTGCTCTGCCTTCCGTGGCCATCCTGCAACAGCATTTCTTCGGGCAGGCTAAAATTTACACCCCTGATTTCCCGTCTTTCCCACTCTCACCATTTAACTATACGGGTACTCCTCTCAATAACACTGGAGTGAGCAACGGAACAAAGGCTTTGGTCATACCCTTTAATACCAGCGTGGAGCGAAGTCGATGTTTCGGGTCAAGTCTTACCATTCGCTTTCTCTTTATTCTTCCTTTCTTGGTCATGGAGCTTCTATGGAACCAAAAGTTCAACTTAATCAGTGGACTTACATTTTTACTAGAAAAGGATGCAGTGGTTAGTGAGAGAAGAAAGGGAAATCAAGATTTCAAAGCGATGACCATATTCCCACCAACTTCAAAAATGAATGGCTGCGAGGTGATGTCTGTGGCTTCAAATTGCAAAATGCCCCTTGAGGGTGTCATTGAAGTCAGGGGAAAGAACAAAAGTATAAACGAAGTCATTCGCGTCATTACAATGGAATCTATATTGAAAAATGAGAAAAGTGAAAGGGTGGATCTATATGAGTTAAAGCCACAGAATGCAAAGTAG 2445 0.4581 MSFVFRGSRGDMESGFSEYVPERATMRVHPTRPVNSNTLAFLITVILLFMILNSPQMSHFLMWLMLVVFVMATSLRMYVTWQQLQAQARAHAAAAELQLHVPPSIAIATRGRLQGLRLQLALLDREFDELDNETLRALESDTASSTTSMADEEINALPVHTYKVHVPTKDGSAGSASSSRATKVKQENGGTEGIVKGTEDDLTCTICLEQVKRGELVRSLPCLHQFHMNCIDPWLRQQAKCPVCKFRMGSGWQANRGDILLGLIYMTGHKEREAKVLELEGGRTSQEQAREVELEEREAKVLELEGGRTSQEQAREVELEGNGKDLKKLLSAEEKVGKVDKCYKAMPHKEHGDGEREVSRTSCCCQRRGQVIGATNLILFPNPTRNIPSSSESGGMRTLRLSFHKLFRQVRANVSDAYTFNGLPGPLYNCSAHDTLRIKVKAGKTYMLRLINAALNDEIFFRIANHSLTVVEADASYVKPFTSDTILVAPGQTTNVLLRTKPFYPNATLFILARPYFTGMGTFDNSTVAGILEYQNPSNINHVGLNRLPLLKPALPAINETSFVANFSGKFRSLNSPKYAANVPQKVDRHFFFTVGLGSSPCPKNQTCQGPTNSSKFQASMNNISFALPSVAILQQHFFGQAKIYTPDFPSFPLSPFNYTGTPLNNTGVSNGTKALVIPFNTSVERSRCFGSSLTIRFLFILPFLVMELLWNQKFNLISGLTFLLEKDAVVSERRKGNQDFKAMTIFPPTSKMNGCEVMSVASNCKMPLEGVIEVRGKNKSINEVIRVITMESILKNEKSERVDLYELKPQNAK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1278 814 SUPERFAMILY Cupredoxins 583 678 IPR008972 -
Lele30g1278 814 MobiDBLite consensus disorder prediction 171 186 - -
Lele30g1278 814 SUPERFAMILY Cupredoxins 412 573 IPR008972 -
Lele30g1278 814 MobiDBLite consensus disorder prediction 168 192 - -
Lele30g1278 814 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Lele30g1278 814 CDD CuRO_2_LCC_plant 410 534 IPR034285 -
Lele30g1278 814 Gene3D - 605 686 IPR008972 -
Lele30g1278 814 Pfam Multicopper oxidase 412 536 IPR001117 -
Lele30g1278 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 250 IPR013083 -
Lele30g1278 814 Coils Coil 113 133 - -
Lele30g1278 814 Coils Coil 285 305 - -
Lele30g1278 814 PANTHER MULTI-COPPER OXIDASE 410 685 IPR045087 -
Lele30g1278 814 Pfam Ring finger domain 203 245 IPR001841 -
Lele30g1278 814 SMART ring_2 204 244 IPR001841 -
Lele30g1278 814 CDD RING-H2_PA-TM-RING 203 245 - -
Lele30g1278 814 Gene3D - 394 576 IPR008972 -
Lele30g1278 814 SUPERFAMILY RING/U-box 199 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1278 Lele-ChrLele30 15302845 15316138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1278 1 253 C3H Transcription Factor Family AT3G55530 67.176 1.10e-107 329
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1278 30 15302845 15316138 Lele31g1429 31 19869424 19871611 hybridization
Lele30g1278 30 15302845 15316138 Lele32g0117 32 665731 668089 hybridization