Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1273 ATGGATCTTCACTTTGATGGAAGCCCAGGTTTTATAAACGGTTATAAACTCGATGATGGCGCCGCCTTCTTCGATTCAAACTATTTCCCATATCCAGCGAACGAGTGGGAATTTGACGAGAACTATCGGAAACCTCTTAACTTCACAACCGATCCATTGTATCAACCTTATGCGAGTCCAGTCAGTTTTGCTCCGCAGAGTAGCGGGAAATATGAAGGATCAGAGCGGTTAGCTTCGTCCTCGACTATAGACCCTGTAGGAGGCGTGTCAGATGCGGCGGCTGCGTCTACGACTTCGCCGCCAGATCCTTCAATGGAAGACGCTGACTTCTCAGAAACTATGAGGTACATAAGCCAAATACTTATGGAAGAGAACTTTGAACAGAAGCCAAGCATGTTTTATGATCCTTTGAGTCTACAAGTCACGGAGAAATCATTCTATGATGCTCTCAGAAAGGATCATCCTCTTTCCCCCAATCAGCATCCCCTAGACGTTCATCAGAATCTTGACAGCACAGATGATAACTGTTGTGGTAGTAGTATTGATGGTGTCAATAACAGGATCAGCATCAACAACTCTCAGGACGCTAATAAGCCCTCTTCCTCCGCTGCTTCATTTTCTGGTGATTATGCGTCCCATTTAAATTTTCAACCCATCTCTGAGAAACCCTCTCAACCTCCGAGTGCTTATACTAATATCAGCGACGGATTGTCAGATGTGGATTCCTCTTTTACTAGGATCATGGCTCAAAATATCTTTACTGATGCAGAATCTGTTTCACAATTTAAAAGGGGGTTGGAAGAAGCCAGCAAGTTTCTTCCTAAAGGACTTCAACTCGTCACTGGTCTGGATAGCAACAATGGGCTTCCAGAGTCAATGGGAGCGGCTAAAAAGGCAGTAGGGAATATTCGGGAGAATTCATATGGACTGAAGGGTAGGAAGAATCATGAACGTGAAGCTAGTGATACAGAAGAAGGGAGAAGTAACAAGCATTCGGCAGTGTATGTGGACGAGAGTGATATATCAGAAATGTTCGATAAGGTGTTGCTTAGTGTTGAGAATGTTCCATTATGTGAGGAACACCACATATGGATGCAGAATGGAACACACAAGGCCAAAGAGCCAATTGAACATCCAAATTCATCTAATGGGGTGAAGACCCGCGGTAGGAGACAGGGCAGGAAGAAGGAAACCGTGGATTTGAGGACTCTTATGGCTCTGTGCGCGCAAGCTGTGTCTGCAAATGACTGCAGAACTGCCAACGAACTGCTAAAGAAGATTAGGCAGCATTCTTCACAACTCGGTGATGCGTCACAGAGGCTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGTCTGGCTTTGGTACTAGAACCCAAATATTCTATGCCTCTCTAAGCTCCAAGAGGATATCTTCTGCTAATATCTTGAGAGCTTACTCAGTTCTAATATCTGTCTGCCCCTTCAGGAAGTTTGCATATTTTTTTGCAAATAAGACGATTATGGAAGCAGCTGAAAAGGCAGAAACCCTTCATATTATCGATTTTGGCATTCAATATGGTTTCCAGTGGCCAATACTTATCAAGTTCCTTTCAAAAAGAGCTGGTGGGCCTCCGAAGCTACGCATCACAGGGATAGAATTGCCCCAAGCTGGGTTTCGTCCGGCAGAATTAATTGAGGAGACCGGTAGACGTCTATCTAATTATTGCAAACGTTTTAATGTTCCGTTTGAATACACTGCCATAGCATCACAAAACTGGGAAACCATCCCGTTAAAGGACTTTAAGATTGAGAGGAACGAACTGCTCGCTGTGAACTGTATGCTGAGACTTAAAAATTTGCTGGACGAGACGATTGAAGTAAAAAGTCCTAGAGATGCAGTTTTGAATTTGATCAGAAAGATGAATCCTAATATTTTTGTTCAATCCATTGTCAATGGATCCTACAATGCCCCTTTCTTCGCCTCACGGTTCAAAGAGGCACTGTTCCATTATTCTGCAATGTATGACATGTTTGACACGGTCATACCTCGTGAAAATGAGTGGAGGTTGATGCTTGAGAGAGAGTTTTTGGGTCGGGAGATCATGAACGTGGTAGCGTGTGAAGGGATCGAGAGGGTCGAGAGGCCTGAGACATACAAACATTGGCAAGTTAGGAATACAAGGGCCGGTTTCAGGCAGCTGCCACTGTCAGATGAGATAATGGTAAAATTCAACGAAAAGTTTAAGGCGTGGTATCACAGGGATTTCGTCATTGATGAAGACCACAACTGGATGCTTCAGGGCTGGAAGGGCCGCATCATTTATGCTTCCACATGTTGGGTGCCATCATAA 2337 0.4437 MDLHFDGSPGFINGYKLDDGAAFFDSNYFPYPANEWEFDENYRKPLNFTTDPLYQPYASPVSFAPQSSGKYEGSERLASSSTIDPVGGVSDAAAASTTSPPDPSMEDADFSETMRYISQILMEENFEQKPSMFYDPLSLQVTEKSFYDALRKDHPLSPNQHPLDVHQNLDSTDDNCCGSSIDGVNNRISINNSQDANKPSSSAASFSGDYASHLNFQPISEKPSQPPSAYTNISDGLSDVDSSFTRIMAQNIFTDAESVSQFKRGLEEASKFLPKGLQLVTGLDSNNGLPESMGAAKKAVGNIRENSYGLKGRKNHEREASDTEEGRSNKHSAVYVDESDISEMFDKVLLSVENVPLCEEHHIWMQNGTHKAKEPIEHPNSSNGVKTRGRRQGRKKETVDLRTLMALCAQAVSANDCRTANELLKKIRQHSSQLGDASQRLAHYFANGLEARLSGFGTRTQIFYASLSSKRISSANILRAYSVLISVCPFRKFAYFFANKTIMEAAEKAETLHIIDFGIQYGFQWPILIKFLSKRAGGPPKLRITGIELPQAGFRPAELIEETGRRLSNYCKRFNVPFEYTAIASQNWETIPLKDFKIERNELLAVNCMLRLKNLLDETIEVKSPRDAVLNLIRKMNPNIFVQSIVNGSYNAPFFASRFKEALFHYSAMYDMFDTVIPRENEWRLMLEREFLGREIMNVVACEGIERVERPETYKHWQVRNTRAGFRQLPLSDEIMVKFNEKFKAWYHRDFVIDEDHNWMLQGWKGRIIYASTCWVPS 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1273 778 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 328 769 IPR005202 -
Lele30g1273 778 MobiDBLite consensus disorder prediction 373 396 - -
Lele30g1273 778 MobiDBLite consensus disorder prediction 63 108 - -
Lele30g1273 778 Coils Coil 420 440 - -
Lele30g1273 778 ProSiteProfiles GRAS family profile. 392 776 IPR005202 -
Lele30g1273 778 MobiDBLite consensus disorder prediction 308 330 - -
Lele30g1273 778 Pfam GRAS domain family 402 775 IPR005202 -
Lele30g1273 778 MobiDBLite consensus disorder prediction 63 104 - -
Lele30g1273 778 MobiDBLite consensus disorder prediction 309 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1273 Lele-ChrLele30 15276938 15279274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1273 113 778 GRAS Transcription Factor Family AT1G07530 49.718 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele30g1273 GRAS 2.7e-114 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1273 30 15276938 15279274 Lele31g1423 31 19831619 19833928 hybridization
Lele30g1273 30 15276938 15279274 Lele32g0122 32 694706 696736 hybridization