Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1268 ATGGCTCTCCCCGTTCTACTCTGCATCGCTTCCCTCTTCTCATTCCTCTGCCAAATCGAAGCCAGAATCCCTGGCGTTTACTCTGGTGGCGCTTGGCAATCTGCTCATGCTACTTTCTACGGAGGATCTGATGCTTCTGGCACTATGGGTGGAGCTTGTGGGTATGGTAATCTCTACAGCCAAGGGTACGGAGTGAACACGGCGGCATTGAGCACCGCACTGTTCAACAGTGGCTTCAGCTGCGGCTCTTGCTTTGAGATTAAGTGTGCAAACGACAGGCAGTGGTGCCACTCGGGCAGCCCATCCATCTTCATCACGGCCACTAACTTCTGCCCACCAAACTACGCCCTTCCAAATGACAATGGTGGCTGGTGCAATCCTCCCCGCCCCCACTTCGATCTCGCCATGCCTATGTTCCTCAAGATAGCCGAGTACCGCGCTGGCATTGTCCCCGTCGCCTACCGCAGGGTGCCATGCAGGAAGCGAGGAGGGATAAGGTTCACGGTCAATGGGTTCAGATACTTCAATTTGGTGATGATCAGCAACGTTGCGGGTGCAGGGGATTTAGTGAGGGCTTACGTGAAGGGGACGAGGACGGCGTGGATGCCGATGAGCAGGAACTGGGGGCAGAATTGGCAGTCAAACGCGGTCTTGGTGGGTCAAGCGCTGTCGTTTAGGGTGACCGGCAGTGACAGGCGCACTTCTACCTCGTGGAACATCGCTCCTCCTCACTGGCAATTTGGTCAAACTTTCACCGGAAAGAATTTTCGGTTCAATGGGAATGGTCAAAATGATAGGGTTTGTTTGATTCACTGTCACCCACGTGTTGTCTGCCGTTATCATGTCTATTTGATGATGTCCCTCGTATATGCGTAA 876 0.5365 MALPVLLCIASLFSFLCQIEARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGFSCGSCFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVMISNVAGAGDLVRAYVKGTRTAWMPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPHWQFGQTFTGKNFRFNGNGQNDRVCLIHCHPRVVCRYHVYLMMSLVYA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1268 291 Gene3D - 164 256 IPR036749 -
Lele30g1268 291 Pfam Lytic transglycolase 67 154 IPR009009 -
Lele30g1268 291 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lele30g1268 291 FunFam Expansin 164 256 - -
Lele30g1268 291 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Lele30g1268 291 PANTHER EXPANSIN-A15 17 256 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lele30g1268 291 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lele30g1268 291 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lele30g1268 291 Gene3D - 21 160 IPR036908 -
Lele30g1268 291 FunFam Expansin 21 160 - -
Lele30g1268 291 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lele30g1268 291 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Lele30g1268 291 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lele30g1268 291 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lele30g1268 291 SMART dpbb_1 67 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1268 Lele-ChrLele30 15258445 15260163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1268 1 257 Expansin Gene Family AT2G39700 82.101 4.48e-160 444