Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1264 ATGGCGGACGCAGAGGATATTCAGCCACTCGTCTGTGATAACGGGACGGGAATGGTTAAGGCTGGATTCGCTGGAGACGATGCTCCGAGGGCGGTGTTCCCCAGCATTGTCGGCCGTCCACGTCACACAGGTGTCATGGTTGGGATGGGCCAGAAAGATGCATATGTAGGAGATGAAGCTCAGTCCAAGCGTGGTATATTGACTCTGAAATATCCCATCGAGCACGGTATCGTGAGTAACTGGGACGACATGGAAAAGATCTGGCACCACACCTTCTACAATGAACTCCGTGTTGCCCCAGAGGAGCACCCCGTTTTACTCACTGAAGCACCCCTCAATCCTAAAGCTAATCGTGAGAAAATGACCCAAATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTCGCCATCCAGGCCGTTCTCTCCTTGTACGCCAGTGGCCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGCCACACTGTGCCCATTTATGAGGGCTATGCCCTACCACATGCCATTCTGCGTCTTGACTTGGCAGGGCGTGATCTCACTGATGCTTTAATGAAGATTCTGACGGAGCGTGGTTATTCCTTCACCACCACTGCTGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAGCTGGCTTATATTGCCCTTGACTATGAACAAGAGCTTGAAACTGCAAAGACCAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCCGACGGACAGGACTTGTACGGGAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCGGGGATTGCTGACAGAATGAGCAAGGAAATCACTGCTTTGGCCCCGAGCAGCATGAAGATCAAGGTGGTCGCTCCGCCAGAGAGAAAATACAGTGTCTGGATAGGTGGCTCCATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCTTCAATTGTGCACAGGAAATGCTTTTAA 999 0.5115 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1264 332 FunFam Actin, alpha skeletal muscle 276 332 - -
Lele30g1264 332 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lele30g1264 332 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lele30g1264 332 PANTHER ACTIN 249 325 IPR004000 -
Lele30g1264 332 FunFam Actin, alpha skeletal muscle 36 73 - -
Lele30g1264 332 Gene3D - 249 295 - -
Lele30g1264 332 Pfam Actin 5 249 IPR004000 -
Lele30g1264 332 Gene3D - 296 326 - -
Lele30g1264 332 Gene3D Actin; Chain A, domain 4 184 248 - -
Lele30g1264 332 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lele30g1264 332 Gene3D - 10 136 - -
Lele30g1264 332 FunFam Actin, alpha skeletal muscle 182 264 - -
Lele30g1264 332 Gene3D Actin; Chain A, domain 2 37 72 - -
Lele30g1264 332 SUPERFAMILY Actin-like ATPase domain 149 332 IPR043129 -
Lele30g1264 332 PRINTS Actin signature 142 161 IPR004000 -
Lele30g1264 332 PRINTS Actin signature 51 62 IPR004000 -
Lele30g1264 332 PRINTS Actin signature 63 85 IPR004000 -
Lele30g1264 332 PRINTS Actin signature 117 130 IPR004000 -
Lele30g1264 332 PRINTS Actin signature 28 37 IPR004000 -
Lele30g1264 332 PRINTS Actin signature 238 254 IPR004000 -
Lele30g1264 332 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lele30g1264 332 ProSitePatterns Actins signature 2. 313 321 IPR004001 -
Lele30g1264 332 Gene3D - 138 183 - -
Lele30g1264 332 FunFam Actin, alpha skeletal muscle 3 185 - -
Lele30g1264 332 SMART actin_3 7 332 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1264 Lele-ChrLele30 15235537 15236925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1264 1 332 Cytoskeleton Gene Families AT3G12110 86.207 0.0 656