Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1261 ATGCTGGAAGCTGCCATGGAGGAAGACAAAGCGGCTATAGTGAAGAGTTCGATTGACACGATAAATGAGATAGCTGCGATATCGGACTACAGGAGCACAGTCAAGAAGCAGTACTGCAATTTGGCAAGGAGGTTGAAGTTGTTGATTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGTCGCCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCGAGGGAGCTTTAGAATCGGCCAAACAACTTCTCAGATTCGGGAGCGATGGCAGCAAGATTTATATGGTCTTAGAGAGGGAGCAGATTATGAAACAATACCACGAGGTGACGGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGACAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGACACAATTCAGAAGAGCCAAAGGAAGGGCTGATGCACCTGATGATGAGTTGTATGAGGATATCTTGTCAATTTATGATAAGAGCTGTGATGCAGCAACAGATCCAGCTGTTCTAAGGAGATTAGCTGAAAAATTGCAATTGATGGGAATATCTGATCTTACACAAGAGTCACTAGCTTTGCATGAGATGGTAGCAGCAAGTGGGGGGGATCCGGGAGCAAGTATCGAGAAGATGTCAATGTTACTGAAAAAAATAAAGGATTACGCACAAACAGAGAATCTAGTCATGAATGATACTGAAGGTGGAAAAGGCCTTTCTTCGTGCAGTAGCAGCCATGGGATGAGTGAAAAGGGTCATCCTGCCCCGATTATCCCCAATGATTTTCGATGTCCAATTTCCCTGGAATTGATGAAAGATCCTGTTATTGTTTCCACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAATCAGGGCGTGGCACCTGTCCAAAAACACAGCAGACGCTTACTAGCACTGTTCTCACACCCAATTATGTCTTACGAAGCCTCATAGCACAATGGTGTGAAGCCAATGGCATGGAACCTCCAAAACGACCCAGCAGTTCCCGGCTTAGTAAGTCAGCATCTGCCTGCTCACCAGCTGAGCGTAGTAAGATCGAAAATCTTCTCCGTAAGCTTACATCTGCTAATCCTGAAGACCAGAGATCAGCAGCAGGTGAGATCCGTCTTTTAGCAAAACGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCACTCCTTGTTGGCCTCCTCTCTATACCTGACTGCCGAACTCAAGAGCACGCTGTGACAGCTCTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGCGTAGTTCATGTGCTCAGGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCGACACTTTTCAGCCTCTCAGTCATAGATGAAAATAAGGTTACTATCGGATCCTCAGGGGCCATCCCACCACTAGTGACACTGCTAAGCGAAGGTACGCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATATACCAGGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGTTGTTCCTACACTAATGCGACTGCTAACAGAACCCGGTGGTGGAATGGTTGATGAAGCACTGGCCATATTGGCAATATTGGCTAGTCATCCAGAAGGGAAGGTTGCAATTGGTGCTGCGGAGGCTGTTCCGGTTTTGGTAGGGGTCATTGGGAATGGATCCCCAAGAAACAAAGAGAATGCAGCTGCTGTTTTAGTACACCTTTGTTCCGGAGATCAGCAATATCTAGCGCAAGCTCAAGATCTTGGTGTGATGGGTCCATTGTTGGATCTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCTGCACAGTTGCTCGAGCGAATGAGCAGATTCCTTGAGCAGCAGCAGCAGGAAGTTCAAACAGAGACTGAAGTGCAAGTTCAGAATCAGGATATACAGCCCCCTTCTATTACTAACCTTGTTGATAGCTGA 2010 0.4607 MLEAAMEEDKAAIVKSSIDTINEIAAISDYRSTVKKQYCNLARRLKLLIPMFEEIRDSKEASPEETLKALISFEGALESAKQLLRFGSDGSKIYMVLEREQIMKQYHEVTAQLEQALSGISYDKLDISDEVKEQVELVLTQFRRAKGRADAPDDELYEDILSIYDKSCDAATDPAVLRRLAEKLQLMGISDLTQESLALHEMVAASGGDPGASIEKMSMLLKKIKDYAQTENLVMNDTEGGKGLSSCSSSHGMSEKGHPAPIIPNDFRCPISLELMKDPVIVSTGQTYERSCIEKWLESGRGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSRLSKSASACSPAERSKIENLLRKLTSANPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSIPDCRTQEHAVTALLNLSICENNKGSIISSGAVPGVVHVLRKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKVAIGAAEAVPVLVGVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQDLGVMGPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQQQEVQTETEVQVQNQDIQPPSITNLVDS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1261 669 FunFam RING-type E3 ubiquitin transferase 346 497 - -
Lele30g1261 669 FunFam RING-type E3 ubiquitin transferase 262 336 - -
Lele30g1261 669 SUPERFAMILY RING/U-box 263 339 - -
Lele30g1261 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 431 471 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 596 636 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 472 512 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 513 553 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 554 594 IPR000225 GO:0005515
Lele30g1261 669 SMART arm_5 390 430 IPR000225 GO:0005515
Lele30g1261 669 FunFam RING-type E3 ubiquitin transferase 537 656 - -
Lele30g1261 669 MobiDBLite consensus disorder prediction 335 354 - -
Lele30g1261 669 CDD RING-Ubox_PUB 267 309 IPR045210 -
Lele30g1261 669 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Lele30g1261 669 Coils Coil 628 648 - -
Lele30g1261 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Lele30g1261 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Lele30g1261 669 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Lele30g1261 669 PANTHER U BOX DOMAIN-CONTAINING 33 636 - -
Lele30g1261 669 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Lele30g1261 669 MobiDBLite consensus disorder prediction 340 354 - -
Lele30g1261 669 SUPERFAMILY ARM repeat 361 644 IPR016024 -
Lele30g1261 669 Gene3D - 9 123 IPR036537 GO:0007166
Lele30g1261 669 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Lele30g1261 669 MobiDBLite consensus disorder prediction 649 669 - -
Lele30g1261 669 Gene3D - 344 666 IPR011989 -
Lele30g1261 669 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Lele30g1261 669 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1261 Lele-ChrLele30 15207195 15211639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1261 6 669 U-box Gene Family AT3G46510 69.428 0.0 925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1261 30 15207195 15211639 Lele31g1407 31 19761594 19765242 hybridization
Lele30g1261 30 15207195 15211639 Lele32g0135 32 766955 770891 hybridization