Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1260 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCCGCAACAAAATCATCAGCAATCAAATGGAACTGAAAGCACTCAGCTGCTTCCTCATGCTGGTGGTTGTGGTGCAGGTTCCGTCCGGCCTGGTTCGATGGCTGACCAGGCCCGGCTAGCGAAGCTACCACCTCCCGAGGCAGCCCTAAAGTGTCCCCGTTGCGAATCCACCAACACAAAATTTTGCTACTTCAACAATTACAACCTGTCTCAACCTCGTCACTTCTGCAAGACATGTCGGCGATACTGGACAAGAGGCGGCGCTCTAAGGAACGTTCCCGTCGGAGGCGGATGCAGAAGAAACAAGAAGAGCAAAAGGAGCCGCTCCAAGTCTCCGTCAGCCGCACCCCCCACCGCTGACAACAAGCAGACCCTTCTCCCCAACGCCGCCGCCAGTGCAATCCCCTCCGGCGCGGCCACAACCGAGTTGATCGGTCAGTTGCAGCAACCTTCCAACTTGCCATTCATGGCTTCTTTACAAAACCTGGGCGGCCGTTACGGCTTAGGGAACATGGGCCTGAGCTTGCGCGACATTTTAGCCCATACTGAGCCCATGGGCTTTCAAATCGGAGGAGTAGACAACCAGTGGCGCGCACAGCAGCAATTCCCTAATTTCATGAATGGGTTCGAGTCAAATGATTCAGTTGATTCTTCTTACCAGTTTCAAAGCGAGAGCATGGCCGTATTACAGAATGGAGTGATCGGAGAGTCAAGTTCCAGGGTTGCAACTCAGCTGCCACCTGTTAAATTGGAAGAGAGCGGAGCCCTAAATTTGTCAAGACCGCCGATAGGGAATAATAATAGTAATAATCAGTACTATTCATGGACTGATTTATCGGGTCTTGCTTCTTCTTCCACTAGCCACATCTTGTTTTGCATGGGAGTTCGTCTCTTTTGTACTATATGGGTTGGTCACCCTATAGAGCACCAGTTTTCGCCCACATATGAGAACGATAAAGCACAAAGAAGAAAAGTGAAACAGTACTCAACAATGTGCCACTCCACGTTAGCTTTTGCTGAGGCTGTGTTTTCTTTAGTTAGAATTTCAAATTGA 1101 0.4959 MVFSSIPVYLDPPNWQPQQNHQQSNGTESTQLLPHAGGCGAGSVRPGSMADQARLAKLPPPEAALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSRSKSPSAAPPTADNKQTLLPNAAASAIPSGAATTELIGQLQQPSNLPFMASLQNLGGRYGLGNMGLSLRDILAHTEPMGFQIGGVDNQWRAQQQFPNFMNGFESNDSVDSSYQFQSESMAVLQNGVIGESSSRVATQLPPVKLEESGALNLSRPPIGNNNSNNQYYSWTDLSGLASSSTSHILFCMGVRLFCTIWVGHPIEHQFSPTYENDKAQRRKVKQYSTMCHSTLAFAEAVFSLVRISN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1260 366 MobiDBLite consensus disorder prediction 12 32 - -
Lele30g1260 366 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677|GO:0006355
Lele30g1260 366 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Lele30g1260 366 MobiDBLite consensus disorder prediction 110 138 - -
Lele30g1260 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 230 IPR045174 GO:0003700|GO:0006355
Lele30g1260 366 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Lele30g1260 366 MobiDBLite consensus disorder prediction 12 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1260 Lele-ChrLele30 15200401 15201988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1260 34 307 C2C2-Dof Transcription Factor Family AT3G55370 42.088 2.57e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele30g1260 zf-Dof 1.7e-32 No_clan