Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1250 ATGTCTGCAGCCCTGGATATGACCCTTGATGATATCATCAAGAAAAACAAGAAATCTGGATCTGGTAACTCCAGAGGTCGTGGCCGAGGATCTGGTCCAGGTCCTGCTCGCCGCTTACCGAATCGTGCCGCCAATCGTGCAGCACCTTATACAACTGCAAAGGCACCGGAGGCGACATGGCAGCATGATATGTTTGCGGATCAGCCGATGGCACCGAACGCAGCTCAAGGTGGTCGAGCGTCTGCCATAGAAACGGGCACTAAGCTCTACATATCTAATTTGGATTACGGTGTTTCTAACGAGGATATTAAGGAGTTGTTTTCCGAAGTTGGTGACATAAAACGGTATGCAATCCATTACGATAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTCTTGTCACGACGAGTTGATGCTGTAGCGGCTGTTAAGAGATACAACAATGTTCAACTTGATGGTAAACCGATGAAGATAGAGATTGTGGGGACAAACATTGCTACACCTGCTGCGGCTCCTGCTGCTAATGGAGTTGTTGGAAATTCAAACGGTGTTCCTAGAGATGGACAAGGTAGAGGTGGGGCTTTTGGAAGGCCACGTGGTGGAGGTAGAGGACGTGGCTTTCAGAGGGGTCGAGGACGTGGAAGAGGAGGTCGTGGAGAGAACGCGTCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTACCATTCAGAGGCAATGCAAATAAACTGA 732 0.4918 MSAALDMTLDDIIKKNKKSGSGNSRGRGRGSGPGPARRLPNRAANRAAPYTTAKAPEATWQHDMFADQPMAPNAAQGGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDIKRYAIHYDRSGRSKGTAEVVLSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAAPAANGVVGNSNGVPRDGQGRGGAFGRPRGGGRGRGFQRGRGRGRGGRGENASAEDLDADLEKYHSEAMQIN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1250 243 SUPERFAMILY RNA-binding domain, RBD 66 193 IPR035979 GO:0003676
Lele30g1250 243 MobiDBLite consensus disorder prediction 214 236 - -
Lele30g1250 243 SMART FoP_duplication_2 175 243 IPR025715 -
Lele30g1250 243 SMART rrm1_1 88 160 IPR000504 GO:0003723
Lele30g1250 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Lele30g1250 243 CDD RRM_THOC4 87 161 - -
Lele30g1250 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 241 - -
Lele30g1250 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lele30g1250 243 Pfam C-terminal duplication domain of Friend of PRMT1 189 238 IPR025715 -
Lele30g1250 243 MobiDBLite consensus disorder prediction 181 243 - -
Lele30g1250 243 Gene3D - 66 226 IPR012677 -
Lele30g1250 243 FunFam THO complex subunit 4 80 229 - -
Lele30g1250 243 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1250 Lele-ChrLele30 15127309 15129229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1250 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.07e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1250 30 15127309 15129229 Lele31g1393 31 19678266 19680214 hybridization
Lele30g1250 30 15127309 15129229 Lele32g0148 32 854742 856675 hybridization