Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1240 ATGGCGATTTCTAGGATTGCTATCGGGAATCCATCGGAGTTGGGCCAAGCCGATGCTCTTAAGGCTGCTCTGGCTGAGTTCATTTCAATGCTCATCTTCGTGTTCGCCGGAGAAGGCTCTGGCATGGCTTTCAACAAGCTTACGGACAATGGATCGACGACGCCGGCGGGGCTAGTGGCAGCATCGTTGGCTCATGGCTTTGCATTGTTCGTGGCGGTTTCAGTTGGCGCCAACATTTCCGGAGGCCACGTGAATCCCGCCGTTACTTTTGGGGCCTTCCTTGGAGGTCACATCTCTCTCCTCAGAAGCGTTTTGTACTGGATCGCCCAATTGCTTGGCTCTGTTGTTGCTTGCTTACTCCTTAAATTTGCCACCGGTGGACTGGAAACATCTGCTTTCTCATTATCTACCGGAGTCGGTGCATGGAACGCGGTGGTGTTTGAGATAGTGATGACCTTCGGTCTGGTGTACACGGTGTATGCGACGGCCTTAGACCCAAAAAAGGGTGACATTGGGATAATTGCTCCGATTGCGATTGGTTTCATCGTCGGGGCTAACATCTTGGCGGGCGGGGCCTTTGACGGAGCATCCATGAACCCAGCTGTTTCTTTTGGACCGGCCGTCGTGAGCTGGACGTGGGCCAACCACTGGGTTTACTGGCTCGGTCCCTTCCTCGGGGCAGCCATTGCTGCCATTGTTTACGAGATATTATTCATGAACCAGACCACTCATCAGCAGCTCCCCACCGCCGATTATTAA 759 0.5349 MAISRIAIGNPSELGQADALKAALAEFISMLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAASLAHGFALFVAVSVGANISGGHVNPAVTFGAFLGGHISLLRSVLYWIAQLLGSVVACLLLKFATGGLETSAFSLSTGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWLGPFLGAAIAAIVYEILFMNQTTHQQLPTADY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1240 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Lele30g1240 252 SUPERFAMILY Aquaporin-like 18 245 IPR023271 -
Lele30g1240 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Lele30g1240 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lele30g1240 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Lele30g1240 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele30g1240 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1240 Lele-ChrLele30 15078855 15079867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1240 1 252 Major Intrinsic Protein MIP AT4G01470 77.381 2.57e-142 397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0092 12 758025 768389 Lele30g1240 30 15078855 15079867 CCT
Lele30g1240 30 15078855 15079867 Lele31g1383 31 19640597 19641591 hybridization
Lele30g1240 30 15078855 15079867 Lele32g0157 32 899214 900225 hybridization