Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1238 ATGTCTTCCAATTCCGGTACGCCTGAGGATGATTCTTGGTTTTTGGAAGCACACAGGGCATCCTCAATCGCCATATTCTGTGTAATCTTCATCATACTAACATTCTACAGCATATTTCAGTGCTTCTTCCATGGAAACCCTCGCACTAGTTCCTCTAGAAACCGCGCTTCAACGGGGGATTCGAACGAGCCCGATCACGATGATCATCATTCTATACAGATTCAAGGTCGTGGTTTAGAGTTGTGGGCCATATCATCTCTTCCGATGTCTCAGTTTAAGAAGAGCGAGGGAGAAGAAGAGAAGGGAAGCAACAGAGAGTGTGCGATATGCTTGGGGGAGTTTGAAGAAGAAGAATGGGTTAAGAGACTTCCAATCTGCGCCCACGTCTTCCATGTTTCTTGCATAACCACGTGGTTTCGATCTCACTCAAATTGTCCTCTCTGCAGATCTAATGTCATTGATGATCATCTCACTCGTAGCTTGGACTCCTCTGCTTCGGCGCTTCTTACTACACATCGCTAG 522 0.4617 MSSNSGTPEDDSWFLEAHRASSIAIFCVIFIILTFYSIFQCFFHGNPRTSSSRNRASTGDSNEPDHDDHHSIQIQGRGLELWAISSLPMSQFKKSEGEEEKGSNRECAICLGEFEEEEWVKRLPICAHVFHVSCITTWFRSHSNCPLCRSNVIDDHLTRSLDSSASALLTTHR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1238 173 Pfam Ring finger domain 106 149 IPR001841 -
Lele30g1238 173 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lele30g1238 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 23 153 IPR044675 -
Lele30g1238 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 154 IPR013083 -
Lele30g1238 173 SMART ring_2 107 148 IPR001841 -
Lele30g1238 173 CDD RING-H2_PA-TM-RING 106 149 - -
Lele30g1238 173 SUPERFAMILY RING/U-box 95 155 - -
Lele30g1238 173 MobiDBLite consensus disorder prediction 48 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1238 Lele-ChrLele30 15066046 15066567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g1238 67 153 C3H Transcription Factor Family AT5G10380 49.425 4.41e-22 88.6